Gene Shew_2554 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2554 
Symbol 
ID4921094 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp3010647 
End bp3011288 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content50% 
IMG OID640164148 
Productouter membrane protein W 
Protein accessionYP_001094679 
Protein GI127513482 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3047] Outer membrane protein W 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.030228 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGAAAA AAACTATCGT TTCAGGTCTG ATCGCTGCCG CCCTACTGTC TACTGGATTT 
GCCGCTTCTG CTCACCAAGC TGGTGACATC ATCGTTCGTG CCGGTGGTGT TGTTGTTGCC
CCTAATGAGT CGAGCGAAGA CGTTGCTGGT TTTGGCGAAT TCAACATCAG CAGCAACACG
CAGCTGGGTC TGAACTTCGG TTACATGCTG ACCGACAACA TTGGTATCGA GTTGTTGGCC
GCTACCCCTT TTAGCCATGA CGTATCGCTA AAAGGCGTTG GTAAGATTGC CGAGACCAAG
CACCTGCCAC CTACCTTAGT GGCTCAATAT TACTTTGGTT CGGCCGATTC TAAGCTACGT
CCTTATATCG GTGCCGGTGT GAACTTCACT AACTTCTTCG ACAGTGAATT TACCAATGAC
CTCGATGGTG CATTGACCGA CCTTAGCCTA AGCAACTCAT GGGGCTTAGC GGCGCAAGCG
GGTATCGACT ACCAAGTGAA CAAGAACTGG TTGGTTAACG CCTCAGTGTG GTACGCCAAG
ATCAATACCG ACGTGAACTT CAAGCTTGCC GGTCAAGCGG TTAGCATCGA AACCGATATC
GATCCTTGGG TTTACATGGT GAGCGTAGGC TACACATTCT AA
 
Protein sequence
MMKKTIVSGL IAAALLSTGF AASAHQAGDI IVRAGGVVVA PNESSEDVAG FGEFNISSNT 
QLGLNFGYML TDNIGIELLA ATPFSHDVSL KGVGKIAETK HLPPTLVAQY YFGSADSKLR
PYIGAGVNFT NFFDSEFTND LDGALTDLSL SNSWGLAAQA GIDYQVNKNW LVNASVWYAK
INTDVNFKLA GQAVSIETDI DPWVYMVSVG YTF