Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2554 |
Symbol | |
ID | 4921094 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 3010647 |
End bp | 3011288 |
Gene Length | 642 bp |
Protein Length | 213 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640164148 |
Product | outer membrane protein W |
Protein accession | YP_001094679 |
Protein GI | 127513482 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3047] Outer membrane protein W |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.030228 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGATGAAAA AAACTATCGT TTCAGGTCTG ATCGCTGCCG CCCTACTGTC TACTGGATTT GCCGCTTCTG CTCACCAAGC TGGTGACATC ATCGTTCGTG CCGGTGGTGT TGTTGTTGCC CCTAATGAGT CGAGCGAAGA CGTTGCTGGT TTTGGCGAAT TCAACATCAG CAGCAACACG CAGCTGGGTC TGAACTTCGG TTACATGCTG ACCGACAACA TTGGTATCGA GTTGTTGGCC GCTACCCCTT TTAGCCATGA CGTATCGCTA AAAGGCGTTG GTAAGATTGC CGAGACCAAG CACCTGCCAC CTACCTTAGT GGCTCAATAT TACTTTGGTT CGGCCGATTC TAAGCTACGT CCTTATATCG GTGCCGGTGT GAACTTCACT AACTTCTTCG ACAGTGAATT TACCAATGAC CTCGATGGTG CATTGACCGA CCTTAGCCTA AGCAACTCAT GGGGCTTAGC GGCGCAAGCG GGTATCGACT ACCAAGTGAA CAAGAACTGG TTGGTTAACG CCTCAGTGTG GTACGCCAAG ATCAATACCG ACGTGAACTT CAAGCTTGCC GGTCAAGCGG TTAGCATCGA AACCGATATC GATCCTTGGG TTTACATGGT GAGCGTAGGC TACACATTCT AA
|
Protein sequence | MMKKTIVSGL IAAALLSTGF AASAHQAGDI IVRAGGVVVA PNESSEDVAG FGEFNISSNT QLGLNFGYML TDNIGIELLA ATPFSHDVSL KGVGKIAETK HLPPTLVAQY YFGSADSKLR PYIGAGVNFT NFFDSEFTND LDGALTDLSL SNSWGLAAQA GIDYQVNKNW LVNASVWYAK INTDVNFKLA GQAVSIETDI DPWVYMVSVG YTF
|
| |