| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2545 |
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| Symbol | |
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| ID | 4921160 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3001822 |
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| End bp | 3002727 |
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| Gene Length | 906 bp |
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| Protein Length | 301 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640164139 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001094670 |
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| Protein GI | 127513473 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATCGCAA ATGAGCAGAT GGTCGCCGTG CTAGAGGCAC TGCCGGATCC GGCGTTTATT
TTGTCCAGTA GCGGCAAATA TGTGGCCGTC TTCGGCGGCA GCGATGCGCG CTACTATCAC
GATGGTCGTG GCCTCATAGG TGCCTACCTC CATGAGGTGA TCAAGCCCGC CAAGGCAGCC
TGGTTTCTGC AAACCATTGA CAGGGCACTC TCGACCCGCC ACCTGCTGAT CGAAGAATAT
GAGCTGAGCA ACAAGGATGT GAAGGGGCTG CCCGACGAGG GGCCGGTGGC GCCAATCTGG
TTTGAGGGGC GAATTCAGGC GCTGGATTTT CGCGTCGACG GCGAAGAGGT AGTGCTCTGG
GTCGCCAGTA ATATCTCTAA GCGGCACGAG CTGGAGTTAA GGCTCAGGGA ACTGAGCGAT
ACGGACCAGC TGACCGGCCT TTATAATCGT CGCCGTCTCG AGCGTGACTT TGCCCTGCAT
TTCGACAACT TCAGCGAGCA GGGGATGCCA ACCACCATAT TGATGCTGGA TATCGATAAC
CTGAAACAGA TCAACGATGC CAAGGGCCAC CATAAGGGGG ATGAGAACAT CCTGGCCGTA
GCCGAGATCT GCCGCCGCGA GTTTCGTAAG ACAGACTATG CCTACCGCTT CGGTGGTGAT
GAGTTTGTGG TGGTCTTGCC GGGTCTGCTG CCGACCCAGG CGATGGCCAT GGTCGAGGCG
CTGCATCAGA GCTTCAATCG CGCCTTATCT ACCCTGGCCG AAGATGAGCT ACTGGCCACC
ATCAGCCTGG GGATGACAGG GATAAAGGCG GGCGATACCT CCTACCAGGA TACCCTTAGG
CGCGCCGATA TGGCCCTGTA TCAGGCTAAA GATCAGGGTA AGAATCAGCT GAGCTATATT
CCTTAG
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| Protein sequence | MIANEQMVAV LEALPDPAFI LSSSGKYVAV FGGSDARYYH DGRGLIGAYL HEVIKPAKAA
WFLQTIDRAL STRHLLIEEY ELSNKDVKGL PDEGPVAPIW FEGRIQALDF RVDGEEVVLW
VASNISKRHE LELRLRELSD TDQLTGLYNR RRLERDFALH FDNFSEQGMP TTILMLDIDN
LKQINDAKGH HKGDENILAV AEICRREFRK TDYAYRFGGD EFVVVLPGLL PTQAMAMVEA
LHQSFNRALS TLAEDELLAT ISLGMTGIKA GDTSYQDTLR RADMALYQAK DQGKNQLSYI
P
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