| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2535 |
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| Symbol | |
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| ID | 4921240 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2992865 |
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| End bp | 2994505 |
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| Gene Length | 1641 bp |
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| Protein Length | 546 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640164129 |
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| Product | pyridoxal-dependent decarboxylase |
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| Protein accession | YP_001094660 |
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| Protein GI | 127513463 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACATCAA AACAGACACG ACAAGCGACC GCCTCTGAAG AGGCCTTGAT GCGTATTTTC
ACTCTGCCCG AGGCACCGAA TTCGACCCTG GGTAAGATAG AGAAAAACCT GTCGGAAAAC
CTGATGGGCT TCCTCAAAGA GAGTATCGTC GCAGTCGAGA AGCCGCTGAC CGAAATAGAA
AAAGATTTCC AGGCCTACCA GATCCCCACA GCCCCCAGCT TCGTCTCCGA CTATGCCGAG
CAGATGATGC AGACCCTGAT CGCCCACAGC GTGCACACCT CGGCTCCCAG CTTCATAGGT
CATATGACCT CGGCCCTGCC CTATTTCGTG CTGCCACTGT CGAAGATGAT GGTGGGACTC
AACCAAAATC TGGTGAAGAT AGAGACCTCC AAGGCCTTCA CGCCGCTGGA GCGCCAGGTG
CTGGGGATGA TGCACCACAT GGTCTATGGC CAGACAGAAG AGTTCTACCA GAGCTGGATG
CACAGCGCCA GTCACTCATT AGGCGCCTTC TGCTCCGGCG GCACGGTCGC CAACATCACG
GCGCTGTGGA TCGCCCGTAA CCGTCTGTTA AAGCCGGACG GCGACTTCAA GGGGGTGGCC
CAATCTGGCC TGATGCGAGC ACTGCGCCAC TACGGCTATG ACGATCTGGC CATTCTGGTA
TCAACTCGAG GTCACTACTC CCTCGGCAAG GCCGCAGATC TGTTAGGCAT AGGCCGCGAC
AACATCATCA GCGTGCCCTG CGCTAGCGAT AACAAGGTAG ATGTGGCCAA GATGCGCGAA
GCGGCCGAGC AGTTAGCCGA GCAGAACATC AAGGTGATGG CGATTGTCGG CGTGGCCGGC
ACCACGGAGA CAGGTAATAT CGACCCGCTC GATGAGCTTG CGAATCTCGC CGAGCAGCTG
GGTTGCCACT TCCATGTGGA TGCCGCCTGG GGTGGTGCCA GCCTGCTGTC GAGCAAGTAT
CGCCACCTGT TAGCCGGCAT AGAGCGCGCC GACTCAGTCA CTATCGATGC CCACAAGCAG
ATGTACGTGC CCATGGGCGC AGGTATGGTG CTATTTAAAG ACCCGGAATT TGCCAACGCC
ATCAAACACC ACGCCGAATA TATTCTGCGT AAGGGCTCGA AAGATCTGGG TAGCCAGACG
CTGGAGGGGT CACGTCCCGG CATGGCCATG CTGGTTCATG CCTGCTTACA GATCATCGGC
CGCGACGGCT ATGAGATCTT AATCAACAAC AGCCTGGAGA AGGCGCGTTA CTTCGGCGAG
CTGATCGCCG CTCAGGACGA TTTTCAGCTG GTTTCCAGGC CTGAGCTCTG CCTGCTGACC
TACCGCTATG TGCCAGCCAA GGTGCAGGCG CAGCTCAATG AGGCGGTCGC AGCCGGTGAC
GCGGCCCGTG TGAGCGAGAT TAATGCATTG CTTGACGGCC TGACAAAGTT TATCCAGAAG
CGCCAACGTG AGCAGGGAAA ATCCTTCGTC TCCCGTACCC GCATCATTCC AGCCAATAAC
CTGGAGCAGA CCTCTGTGGT GTTCCGCGTG GTACTGGCCA ACCCTTTGAC CAGTAATGAG
ATCTTACAGC AGGTATTGGA TGAGCAGCGC GACATCGCCA AGCTAGACGA CCGCTTCCTG
CCTAAGCTGC TGGCCCTATA G
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| Protein sequence | MTSKQTRQAT ASEEALMRIF TLPEAPNSTL GKIEKNLSEN LMGFLKESIV AVEKPLTEIE
KDFQAYQIPT APSFVSDYAE QMMQTLIAHS VHTSAPSFIG HMTSALPYFV LPLSKMMVGL
NQNLVKIETS KAFTPLERQV LGMMHHMVYG QTEEFYQSWM HSASHSLGAF CSGGTVANIT
ALWIARNRLL KPDGDFKGVA QSGLMRALRH YGYDDLAILV STRGHYSLGK AADLLGIGRD
NIISVPCASD NKVDVAKMRE AAEQLAEQNI KVMAIVGVAG TTETGNIDPL DELANLAEQL
GCHFHVDAAW GGASLLSSKY RHLLAGIERA DSVTIDAHKQ MYVPMGAGMV LFKDPEFANA
IKHHAEYILR KGSKDLGSQT LEGSRPGMAM LVHACLQIIG RDGYEILINN SLEKARYFGE
LIAAQDDFQL VSRPELCLLT YRYVPAKVQA QLNEAVAAGD AARVSEINAL LDGLTKFIQK
RQREQGKSFV SRTRIIPANN LEQTSVVFRV VLANPLTSNE ILQQVLDEQR DIAKLDDRFL
PKLLAL
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