| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2529 |
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| Symbol | |
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| ID | 4921234 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2983886 |
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| End bp | 2985622 |
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| Gene Length | 1737 bp |
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| Protein Length | 578 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640164123 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001094654 |
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| Protein GI | 127513457 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCCCCC TTATCGCCTA TTTACTCAAG ATGTCAGACG CCATGTACTG TGCCCAGCAA
TGTTTCACCC CCTTTAGCAC CTCAATCGAG GGCATAGCGC TGCCTGAGCG GTTTACCTTT
CCCTTTTATT ATGAGCCCCA CAGGCTGTGT GAGCTGGCGG CCAGCGAGCT GCAAGCGCAT
TTAGAGCAGC AACAGACCTG GCAACATAAC TTTGGCCTGA CGGGGCCGCG CGAAGGCGCC
ATAGGTAAGA TGTTTGGCGT GCTGGTGGTG CAAAAGGCTG ATGGCGAGCT TGGCTATCTC
AAGGCGTTTT CCGGTAAGTT AGCCGAGCAG AATCTACTGC CGGGCTTCGT GCCGCCGGTG
TTCGACATGC TGACCCAGGA CAGCTTCTTT CACGGCGAGC AGCTGGCCAT CAATCAGTTA
ACTGCTGAGC TTGAATCGCT GCAGCAGGCG CCAGAACTTG CATCGCTTAG TGATGAGCTA
AACACATTAA ACGCTGGTAA AGCCGCAGCG GTGGCCGAGC TGCGGGCAGA GATCATCGAA
AATCGTAAGG CGCGTAAGGC CAGACGTGTG GCCGGTGAGC GGCTAGATGC CCAGGCATTC
GAGGATTTGC AGCAACAACT TGGCCGCGAG AGCGTGGCCG AGAAGCACAG GCTAAGGCTG
TTAAATGAGC AGTGGGATAG TCAGATCGCC GAGCGCGAGC ATCGCCTAAG CGCGCTGCAA
GATGAGATTG AGGTGCTTAA GCAGCAGAGG GCCAGTCAGT CCAACGCGCT GCAGCGTAAG
CTGTTTGCCC AGTACTGCTT CTTGAATCAG GCGGGGGAGG TCAAAGATCT CAACACACTA
TTTAGCCTCT CAACTAAAAG CCTGTCGCCA AAAGGATTAC CTCCTGCTGG TGCGGGAGAA
TGCGCCGCGC CTAAGCTGTT GCAGTTTGCC TTCGCCAACG GCCTCAAGCC CGTCGCCATG
GCGGAGTTCT GGTGGGGGGC ATCGCCCAAA TCGGAGGTGA AGCAGCACAA GCAGTTCTAT
GGCGCCTGTC ACGGTAAGTG TGAGCCGATT TTGGCCCATA TGCTGAGTGG CATAGCGCTG
GATGACAACC CACTGCTGAA CAATCCCGCC GAGGGCAAAG ATCTCTCCAT TATCTATCAG
GATGAGGCGA TCGCCGTGGT CAACAAGCCG GCGGAGTTTC TCTCTGTGCC GGGCAAGCAC
GTAACCGACA GCGTCTATAG CCGTATGCGC CAGGCCTTTC CCAAGGCGAC CGGGCCGCTG
ATTGTCCATC GCCTGGATAT GTCCACCTCA GGCCTGATGG TGATCGCCCT GAGCAGTGAG
GCCAATACCG CATTGGTGCA GCAGTTCATC GGCCGCACCG TGGAGAAGCG TTATCTGGCC
AGGGTAGCGG GTGAGGTGCA GGGGGAAGAG GGCGAGATCA CGCTGCCGCT GCGGGTAGAT
CTCGACGACA GGCCGCGTCA GCTGGTGTGT TTCGAGCACG GAAAACATGC CCATACCTAT
TGGCTGGTAA AATCCAGAGG CGAGGGGACG ACCTTGCTGT CACTGTTTCC TAAGACGGGA
CGTACCCATC AGCTCAGGGT GCACTGTGCC CATCAGGATG GCCTGGGCAT GCCCATCATA
GGCGATGATC TCTACGGGGC TAAGGCCAAC CGCCTGCATC TGCACGCCCA GTATCTGGCC
TTTAACCATC CCATCAGCGG TGAGCGAGTC AGCTTTAGCT GCGATCCCGA TTTTTAG
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| Protein sequence | MGPLIAYLLK MSDAMYCAQQ CFTPFSTSIE GIALPERFTF PFYYEPHRLC ELAASELQAH
LEQQQTWQHN FGLTGPREGA IGKMFGVLVV QKADGELGYL KAFSGKLAEQ NLLPGFVPPV
FDMLTQDSFF HGEQLAINQL TAELESLQQA PELASLSDEL NTLNAGKAAA VAELRAEIIE
NRKARKARRV AGERLDAQAF EDLQQQLGRE SVAEKHRLRL LNEQWDSQIA EREHRLSALQ
DEIEVLKQQR ASQSNALQRK LFAQYCFLNQ AGEVKDLNTL FSLSTKSLSP KGLPPAGAGE
CAAPKLLQFA FANGLKPVAM AEFWWGASPK SEVKQHKQFY GACHGKCEPI LAHMLSGIAL
DDNPLLNNPA EGKDLSIIYQ DEAIAVVNKP AEFLSVPGKH VTDSVYSRMR QAFPKATGPL
IVHRLDMSTS GLMVIALSSE ANTALVQQFI GRTVEKRYLA RVAGEVQGEE GEITLPLRVD
LDDRPRQLVC FEHGKHAHTY WLVKSRGEGT TLLSLFPKTG RTHQLRVHCA HQDGLGMPII
GDDLYGAKAN RLHLHAQYLA FNHPISGERV SFSCDPDF
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