| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2525 |
|---|
| Symbol | |
|---|
| ID | 4921230 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 2977355 |
|---|
| End bp | 2979325 |
|---|
| Gene Length | 1971 bp |
|---|
| Protein Length | 656 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640164119 |
|---|
| Product | decaheme cytochrome c |
|---|
| Protein accession | YP_001094650 |
|---|
| Protein GI | 127513453 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR03507] decaheme c-type cytochrome, OmcA/MtrC family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000837992 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAACG TACAAAATAA TAAATTTAAG CTGCTACTCG CAGCAGGTGC CGTCTCCATG
GCTCTCACTG GTTGTGGTGG CAGCGACGGT AGTGATGGTA ATCCTGGCAA CCCAGGCGGC
CCAGCAGCCG ATGCCATTGA AGTACTTCAC CTTGATGTCA CCAAGGTTGA ATACGACAAC
GGCACACCCA CAATCACAGT CTTTGCGACC AACCAGGAAG ATCTTCCTGT TATCGGTCTG
AAAGATCTTG AAGTGAAAAA AGTGGTTCAG CTACTGCCAC AAGGCACGAC CGGTGCAGGT
AATGCCGCCG AATGGCAATA TATCGGCTCA CAAAAAGCCT TTACCGACCA CAAGAATGGT
AACTACACCT TCACCATCGA CGTGGAAGGC TACAACCCAG AGCTGACCCA AAGATACAAT
ATCGTCGCCA AGGCCTCGAC ACTGCTCGAC GGCGTCACCC TGGTGCCGCA AACCGAGATC
GCCGAAGACT TCTCTGGCGA AGGTTATGAG CCACTCTACA CCAAGAATGT GGTCTCAACC
GCCAGCTGTA ACAGCTGTCA CGCCGAAGGA CAGAAGATCT ACCACAGCTA CACCAGCGTA
GAGACCTGTG TCTCTTGTCA CACCCAAGAG ATGGCTGATG AGAAAGGTAA GCCACAAGTT
GCCTTTAACC ATCTGATCCA CAACGTCCAC AACGACGCTA AGATGTATGG CCGCAACATG
GACCAGAGCG CCGAAACTGC GCACCACATA GTCCAGGACA ACTGCCAAGC CTGTCACGTT
CAGTCTGACG AGCTCACCGA GTGGGGCAAC TGGTCACGTA TTCCAACCAT GGAAACCTGT
ACTAGCTGTC ACGTCAACAT CGACTTTAAG GCGGGTAAAG GCCACTCTCA GCAAAACGAC
AACAGCAACT GTGTTGCCTG TCATAACGCG AGCTGGACTG CCGAGCTGCA CACTCAAGCT
GGTAGCGACA AGAAAGCCCT TATCGACCAA TACGGCCTGA ATGTTGAGTC AACCATCAAC
ACCGAAGGCA CTGCTGCCAC CATCAGCGTT CAAGTGGTCG ATGCCAGCGG CGCCGCCGTT
GATATCAACA CCATTCTGCC TATGGTACAG CGCTTCGAGA TCGTGACTAA CGTAGGTCCT
AACAATGTAA CCCTAGGTTA TGGCGGTAAA GACTCTATCA ACGCCGTGAA GAATGGCGTG
GTCGATGCCA AGGCGCTAGT CGAAGATGGC AAGCTGGTTT ACACCACTAG CAAAGATCTT
AAGCTAGGTG CCAACGGTAT CGACAGCGAG ACCGCCTTTA CCTTCGTTGG CTGGGCAATG
TGCTCAGACA AGGGTGAGTT CGTGACCTGT GACGATCCTG CCTTCGACGG TAGCGACACC
GACAAGTACA CCGGCATGAA AGCCGACCTT GCCTTCGCCG CACTAGCAGA CAAGGCGCCA
AGCATGCGTC ACGTCGACTC AGTGAACTTC ACCGCCTGTG CCTCTTGTCA CACCACAGAG
TTTGAAGTGC ACAAGGGTAG CCACCATGCA GGTTTCGTCC TGTCTGAGCA GCTCTCTCAC
GCGAAAGACG CCAACGACAT GCCTATCATA GGTGTCGATG CCTGTGTGGC CTGTCACACA
CCTGACGGCA CATACGCTGG CGGCGCGAAC AAGGGTGCCC TGGAGATGAA GCTGCACGTG
GTACACGGCG AGCAAGGCAT CATCAAAGAT TGTGCCCAGT GTCACAACGA CTTCAACCTG
GACGCCTTCA AGGCTAAAGG TGCCCTGGCA ACTGCTGCTG GCCAATACAG CACACCTATC
GCCGCGACTT GTACTTCTTG TCACACAAGC GATAGCGTCA AGGCCCACGC CGAAAGCCAA
GGTGCCATCA TCAATGGTGC TAAAGATGTC GCTAACGATG CGGCGCAGCT AGAAACTTGT
TTCTTCTGCC ACGCACCTGT TATCGAAGAT CACACTGCGG TGAAGATGTA A
|
|---|
| Protein sequence | MMNVQNNKFK LLLAAGAVSM ALTGCGGSDG SDGNPGNPGG PAADAIEVLH LDVTKVEYDN
GTPTITVFAT NQEDLPVIGL KDLEVKKVVQ LLPQGTTGAG NAAEWQYIGS QKAFTDHKNG
NYTFTIDVEG YNPELTQRYN IVAKASTLLD GVTLVPQTEI AEDFSGEGYE PLYTKNVVST
ASCNSCHAEG QKIYHSYTSV ETCVSCHTQE MADEKGKPQV AFNHLIHNVH NDAKMYGRNM
DQSAETAHHI VQDNCQACHV QSDELTEWGN WSRIPTMETC TSCHVNIDFK AGKGHSQQND
NSNCVACHNA SWTAELHTQA GSDKKALIDQ YGLNVESTIN TEGTAATISV QVVDASGAAV
DINTILPMVQ RFEIVTNVGP NNVTLGYGGK DSINAVKNGV VDAKALVEDG KLVYTTSKDL
KLGANGIDSE TAFTFVGWAM CSDKGEFVTC DDPAFDGSDT DKYTGMKADL AFAALADKAP
SMRHVDSVNF TACASCHTTE FEVHKGSHHA GFVLSEQLSH AKDANDMPII GVDACVACHT
PDGTYAGGAN KGALEMKLHV VHGEQGIIKD CAQCHNDFNL DAFKAKGALA TAAGQYSTPI
AATCTSCHTS DSVKAHAESQ GAIINGAKDV ANDAAQLETC FFCHAPVIED HTAVKM
|
|---|
| |