| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2519 |
|---|
| Symbol | |
|---|
| ID | 4921286 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 2964239 |
|---|
| End bp | 2965207 |
|---|
| Gene Length | 969 bp |
|---|
| Protein Length | 322 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640164113 |
|---|
| Product | cytochrome C family protein |
|---|
| Protein accession | YP_001094644 |
|---|
| Protein GI | 127513447 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01905] doubled CXXCH domain
[TIGR03508] decaheme c-type cytochrome, DmsE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.589751 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGATGA AAAAGGAATC GACTTGGCTG CGTGCCCTTA GGCTAACGGC CCTACTCGCG
CTATACCCTC TCTTTAGTTT GCTCGCTCAG GCAACCCCCT GGGATGAGAT GCCCGCCGAC
GAGGTGGAGA AGATCCTCGA TAGCAAATTC GCCGAAGGTC AATACTCCCC CAAAGGCGCC
GATAGCTGCC TCATGTGCCA TCGCAAGAAC CAAACCGTCA TGGCGCTATT TGACGGCGTG
CATGGCAATC CCCAGGTAAA AGGCTCCCCC ATGGCCGACC TGCAGTGCGA AGCCTGCCAC
GGCCCCATGG GCAAACATAA TCGTGGCGGC AAGGAGCCTA TGATCACCTT CGGCTCCAAC
TCACCCGTGC CAGCAGAGAA ACAAAACAGC GTCTGCATGA GCTGCCATAA CGACGACCAG
CGCATGGGCT GGAGCGGCAA TCATCACGAC AATGCCGATG TCGCCTGTAG CGATTGTCAC
CAGGTACACA CGGGTCACGA CCCCATTAGC GATAAGAGCC AGGAGGTCGC CGTCTGCACC
ACATGTCATA CCCAACAAAA GGCCGACCTG CACAAGCGCA GCAGCCACCC CCTCAAGTGG
CAACAGATGG TCTGTAGCGA CTGTCACAAT TCCCACGGCG GTCTGGGCGA GGCCAGCCTA
AAACAGATGA GCATCAACGA CAACTGCTAC GCCTGCCACG CCGAGAAACG TGGGCCTAAG
CTGTGGGAAC ATGCGCCGGT CACCGATAAC TGCGCCAACT GTCATAATCC CCACGGCACG
GTCAACGAGG CCATGTTGAT CGCCAAGCCC CCTCAGCTTT GCCAGCAGTG CCACGCCAGC
GACGGTCACG CCGCCAATCC GGTATTTGCC AACAGCCCTA ATGCCTTCAA CGGCGGCCAA
AGCTGCCTCA ACTGCCACAA CCAGGTGCAT GGCTCTAACC ATCCATCGGG CAAACTACTG
CAACGTTAA
|
|---|
| Protein sequence | MMMKKESTWL RALRLTALLA LYPLFSLLAQ ATPWDEMPAD EVEKILDSKF AEGQYSPKGA
DSCLMCHRKN QTVMALFDGV HGNPQVKGSP MADLQCEACH GPMGKHNRGG KEPMITFGSN
SPVPAEKQNS VCMSCHNDDQ RMGWSGNHHD NADVACSDCH QVHTGHDPIS DKSQEVAVCT
TCHTQQKADL HKRSSHPLKW QQMVCSDCHN SHGGLGEASL KQMSINDNCY ACHAEKRGPK
LWEHAPVTDN CANCHNPHGT VNEAMLIAKP PQLCQQCHAS DGHAANPVFA NSPNAFNGGQ
SCLNCHNQVH GSNHPSGKLL QR
|
|---|
| |