| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2501 |
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| Symbol | |
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| ID | 4921347 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2940818 |
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| End bp | 2941831 |
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| Gene Length | 1014 bp |
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| Protein Length | 337 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640164092 |
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| Product | oligopeptide/dipeptide ABC transporter, ATPase subunit |
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| Protein accession | YP_001094626 |
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| Protein GI | 127513429 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG4170] ABC-type antimicrobial peptide transport system, ATPase component |
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| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.290945 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCATTAC TGGACATTAG AAACCTCACC ATAGAACTCG ATACCCCCCA CGGACGCGTC
AAGGCCCTGG AACGTGTGAG CCTTACCCTC AACCCGGGCG AGGTTCACGG CCTGGTGGGC
GAGTCGGGCT CCGGCCGCAC CTTGCTGGCC AAGGCTATTC TTGGCATCCC GGGTCACAAC
TGGACCATAC AGGCGGATCG CATGATGTGG GATGGACAGA ACCTGATGGA CATGTCCCCC
AGCGAGCGCC GTGTACTCAT GGGCAGCGAG ATGGCGATGA TCTTTCAAGA CCCCATCAGC
AGCTTGGATC CGGCCATAGC CGTCGGCACC CAAATCATCG AGGCGATGCC GGAAAACAAG
GAACTGCCTT GGTGGAAGCG CGGCAGCGAC AAGCGCAAGA AGGCCCAGCA GTGGCTGCAC
AAGGTAGGCA TTAAAGAGAC CCAGAAGATC ATGTCCAGCT ACGCCTGGGA GCTATCCGAC
GGTGAGTGCC AGAAGGTGAT GATCGCCATC GCCGTGGCCA ACCAGCCCAG GCTGCTGATT
GCCGACGAGC CTACCAACTC GATGGAGGTA CGCACTCAGG CGCAGATCTT CCGTCTACTG
AGTAAACTCA ATCAGCTACA AAACGTATCT ATCCTATTGA TTAGTCATGA ATTAGAGACG
CTTTCACAGT GGTGTGACCG CCTAACAGTG ATGTACAGCG GTCAGGTGAT GGAATCGGGA
GTGACCAGCG ATGTCATCGC CAATCCCTAT CACCCTTACA CCAAGGCGCT GTTGGATAAT
ATTCCCGATT ACTCCAATCC CGAGCACCAC AAGACCATGA TGCAGACGTT GCCAGGCTCG
GCGCCGGCGC TACAACATCT ACCCATAGGG TGCCGACTCG GCCCGCGTTG CCCCCAGGCC
CAGAAGCTCT GCGTCAACCA GCCAAGCCTT TGTCACCAGA AAGATCGCTA TTTTGCCTGT
CATTTCCCTT ATCACAATGA GCCATGCCAT GAAGAGCCCC TTACTAAAAG TTAA
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| Protein sequence | MPLLDIRNLT IELDTPHGRV KALERVSLTL NPGEVHGLVG ESGSGRTLLA KAILGIPGHN
WTIQADRMMW DGQNLMDMSP SERRVLMGSE MAMIFQDPIS SLDPAIAVGT QIIEAMPENK
ELPWWKRGSD KRKKAQQWLH KVGIKETQKI MSSYAWELSD GECQKVMIAI AVANQPRLLI
ADEPTNSMEV RTQAQIFRLL SKLNQLQNVS ILLISHELET LSQWCDRLTV MYSGQVMESG
VTSDVIANPY HPYTKALLDN IPDYSNPEHH KTMMQTLPGS APALQHLPIG CRLGPRCPQA
QKLCVNQPSL CHQKDRYFAC HFPYHNEPCH EEPLTKS
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