| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2500 |
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| Symbol | |
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| ID | 4921346 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2939915 |
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| End bp | 2940805 |
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| Gene Length | 891 bp |
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| Protein Length | 296 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640164091 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_001094625 |
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| Protein GI | 127513428 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG4171] ABC-type antimicrobial peptide transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.170026 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGCAAA TTAAAATCTA TCAGGAAGAT CATATCCCCT CGCCCCTGAG CCGGATCTGG
TCCGCCTTTA CCGACAACCC CTTCGCCTTT GCCGGGCTCT GGGCCGTCTG TTGTCTGCTG
CTTCTGGCTC TATTTGGCCC GCTTATCGCC CCATATAGCC CTGAGCATCA AGACCCATTA
GCGCTACTAC TGGCGCCCTC CTGGGAGCCC ACAGGCACTG TGGAGCACTT CCTCGGCACC
GACGACTTGG GCCGCGACAT CTTCAGCCGC CTGCTCCATG GCGCCCACCT GACCTTCGGT
ATGGCGCTGG CAATAGTTAT CACCGCCCTG CTGCTGGGTT TCATCATAGG CTCCATCTCG
GGCATGATGA AGGGCCTCAA GTCGAGTATC TTGAGCCACC TGCTAGACGC TCTGCTGTCT
ATCCCCTCGC TGCTGATGGC GATTCTAGTG GTGGCGGTCA CAGGACCAGG GCTTGGCAAC
GTCTTCTGGG CCGTGGGCAT CGCCCTCACC CCGCAGTTTG TCCGCGCCAT TCACCAGGCG
GTGCACGAAG AGTTACAGAA AGAGTATGTC ACCGCCGCTA GACTCGATGG TGCCAATAGT
TTGCAGATCT TCTGGTATGT GATCCTGCCC AACATCATGG ACACCATGAT CATCCAGACC
ACCTTAGGGA TCTCGGCCGC CATTTTGGAT ATCGCCGCGC TGGGCTTCCT CAACCTGGGG
GCCCAGGCCC CTAGCCCGGA ATGGGGCGCC ATGGTATCTC AAGGCTTAGA TAATCTGCTC
ACCGCTCCCT GGACGGTTAC CATACCCGGC GTCGCCATCC TCTGTAGCGT GCTAGCCATT
AACCTGGTGG GAGACGGACT GCGCTCTGCC CTCTCGCCGA TTCGCTCCTA A
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| Protein sequence | MPQIKIYQED HIPSPLSRIW SAFTDNPFAF AGLWAVCCLL LLALFGPLIA PYSPEHQDPL
ALLLAPSWEP TGTVEHFLGT DDLGRDIFSR LLHGAHLTFG MALAIVITAL LLGFIIGSIS
GMMKGLKSSI LSHLLDALLS IPSLLMAILV VAVTGPGLGN VFWAVGIALT PQFVRAIHQA
VHEELQKEYV TAARLDGANS LQIFWYVILP NIMDTMIIQT TLGISAAILD IAALGFLNLG
AQAPSPEWGA MVSQGLDNLL TAPWTVTIPG VAILCSVLAI NLVGDGLRSA LSPIRS
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