| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2499 |
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| Symbol | |
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| ID | 4921345 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2938897 |
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| End bp | 2939928 |
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| Gene Length | 1032 bp |
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| Protein Length | 343 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640164090 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_001094624 |
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| Protein GI | 127513427 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG4168] ABC-type antimicrobial peptide transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.098131 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAGAT ATCTGATCCG TAGGTTAAAT CTTTTCCTGG CAACCTCACT GGTTCTCTTC
CTGGTAATGT TTATCGTTAC CAGCAAATTT CCCGTCGAGC ATACCTTTGC CTTGACCGGA
CTTCAGTCGC CTACCGCCCA AGAGCTGACG CAAATAGCGC AAGATTATCA ACTCGATAGC
TCGCAGGCAC ATCAGTTTCT CGCCTATCTG CAGCAGCGCC TGTCCGGCAA TCTGGGCATA
TCGGCCACCT CTCAGAACCC GGTGATCGAC GAGCTCACCG CCGTGCTGCC CGCCAGTTTC
GAGCTGGGGA TTGTCGCCGG GCTGATCGCC CTGGTGTTGG GTCTGCCGCT GGGGGTACTT
GCCTCCTTGA GCAAACATAA GATCACCCAG CACACCATCA TGGCGATCAC CCTGACAGGT
TACTCCATTC CTGTGTTCTG GCTCGGCCTG TCACTGTCGC TCTGGTTTGG GGTGCAGCTG
GGCTGGCTGC CGATTTCGGG GCAGATTAAT CTCTTGTATG ACATACGCCC GGTTACCGGC
TTCCTGCTGA TCGATACCCT GCTGTCGGAC TCCCAATACG CCACCTCGGC CTTTATCGAT
GCCCTGCTGC ATATCATCTT GCCGGCGGTA ACCCTGGCAG TACTTCCCTT TACCGTGGTG
GTGCGTATCA CCCGCGCGGC GATGATCGCC ATCATGGAGC AGACCTATAT TAAAGCCGCC
GAGGCCCGTG GCCTTCACAC CAGCATCATA GTGCTGCGCC ACGCATTGCC AAACGCCTTT
ATTCCCGTGC TGAAAAACCT CGGCCTCATG CTCGGCGCCT TTGCCAGTTA TGCTATGGTG
GTGGAGGTGA TCTTTAGCTG GCCTGGCGTG GGCGCCTGGC TGGTCTCTGG GATTTATCAA
CGGGATTATA CTGTGATACA GGGCGGCATC CTCGCCGTGG CCTTAATCAT CATCTTCTTA
AGCATTCTTA TCGAGGTGAT CCATACGGCA ATGAACCCCC TCAGCAGGAA AGAGCTCTAT
GCCGCAAATT AA
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| Protein sequence | MARYLIRRLN LFLATSLVLF LVMFIVTSKF PVEHTFALTG LQSPTAQELT QIAQDYQLDS
SQAHQFLAYL QQRLSGNLGI SATSQNPVID ELTAVLPASF ELGIVAGLIA LVLGLPLGVL
ASLSKHKITQ HTIMAITLTG YSIPVFWLGL SLSLWFGVQL GWLPISGQIN LLYDIRPVTG
FLLIDTLLSD SQYATSAFID ALLHIILPAV TLAVLPFTVV VRITRAAMIA IMEQTYIKAA
EARGLHTSII VLRHALPNAF IPVLKNLGLM LGAFASYAMV VEVIFSWPGV GAWLVSGIYQ
RDYTVIQGGI LAVALIIIFL SILIEVIHTA MNPLSRKELY AAN
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