| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2498 |
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| Symbol | |
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| ID | 4921344 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2937254 |
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| End bp | 2938897 |
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| Gene Length | 1644 bp |
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| Protein Length | 547 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640164089 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001094623 |
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| Protein GI | 127513426 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.228611 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.10844 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGAGC TGCTCAAACG TCTCACGTTA GGTTCGGCGT TTTGTTGTAT CGTGCCACTG
CTGTCGGCCT GTGGACCGAC GCGAGTGCCC TCGGGATTGG TCTATTGCTC TGAAGGCAAC
CCTGAGTCCT TCAACCCCCA ATTGGTCACC TCTGGGACCA CGGTCGATGC GACCTCACAG
CAGCTTTACG ACGGTCTGGT GGATTACGAC GCCAGAACCG GTGAGATGAC CCCATCTCTC
GCCACCTCCT GGCACCTCAG CGATGATGAG AAGGTCTACA CCTTCGAGCT TCGCCAAGAC
GTGCAATTTC ATCGCTCCGA CATCTTTACC CCGAGTCGCA ACTTTAATGC CGACGATGTG
CTCTTCTCTT TCAACCGCAT CATAGATACC GACAACCCCT ATCACTTTGT CTCTAAAAGC
GGTTACCCCT TCTTCCAAAG TATCGGCTTT GCCGAGCTTA TCGACGACAT AGAGAAGATT
GATGACTACC ATGTCGCCTT TCATCTCAAG CATAAAGATG CCTCTTTCCT CTCTAACCTG
GCGACTGGCT TTGCGGTGAT CCTCTCTAAA GAGTATGCCG ACCAACTACA GCGCACGGGC
CAGGAAGAGT TGCTGGACAA ACTGGCGATA GGTACCGGCC CCTTCAGGCT GATCGATTAC
GTCAAGAACG ACTTTATTCG TTACTACCGC AACCCCTACT ACTGGCGCCT GACCCCAGAG
GTCGATCAGC TGGTGTTTGA TATCACGCCA AAGAGCACCA CCCGCCTGGC TAAGCTTATC
ACCGGCGACT GTAACGTCTC GGCCCTGCCT AAGGCCGGTG AGCTGCCGGT GGTGATCGAG
AAAGAGGATC TTGAGGTGGA GTCGCTCCCC GGATTTAACG TCGCCTTCTG GGCTTTTAAT
ACCGAGCGAA TTCCCTTTAA CGATGTCAGG GTGCGCCGCG CACTGGCCCA CGCCATAGAT
AAAGAGAACA TTCTCAGGGC TGTGTATCAG AAGACGGCCG AAGAGGCGGT GGGCCTGCTG
CCGCCACTCT CCTGGGCCTA TTCGGCCAAC GAGAAGATGA TCGACTACAA CCCAGAGAAA
GCCCGCGAGC TACTCGACGA GGCTGGGGTA AAAAACCTCA CCATAGATAT CTGGGCCATG
CCAGTCGCCC GTATCTATAA CCCCAACGCC CATAAGACCG CCGAGCTTAT CCAGGCGGAT
CTGGCCAACA TTGGCGTCAA GGTCAATATC GTCAACTACG ACTGGAGCGT CTTCAATCAG
AAGCTGAGCC AACATGGTTA CGATTCGGTG CTCATCGGCT GGAACGCCGA CAACAGCGAC
CCCGATAACT TCTTTACCCC TATTTTAAGC TGCGCCTCGG TGGGCTCAAA CAGCAACCGT
TCGCGCTGGT GTGACCCTGC CTTCGACCAT ATCCTCAACG CGGCCAAGTC CACCACAGAC
AGAGAGAAGC GAGCGCGTCT CTATCAAGAG GCCGAGCAGT ATGTGGCCGA GCAGGTACCT
ATGCTGCCCT TCGCCCACGC TACCCGCATG GTGGTGAAAC AAAAATCGGT GACCGAGGCT
AAGCTGACCC CCTTTGGCGG CATCTCCTTC ACCAAGACGT CCGCCCAGCC TCGCCTTGCC
AGCGACAACA AGGAGAGTAA CTGA
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| Protein sequence | MKELLKRLTL GSAFCCIVPL LSACGPTRVP SGLVYCSEGN PESFNPQLVT SGTTVDATSQ
QLYDGLVDYD ARTGEMTPSL ATSWHLSDDE KVYTFELRQD VQFHRSDIFT PSRNFNADDV
LFSFNRIIDT DNPYHFVSKS GYPFFQSIGF AELIDDIEKI DDYHVAFHLK HKDASFLSNL
ATGFAVILSK EYADQLQRTG QEELLDKLAI GTGPFRLIDY VKNDFIRYYR NPYYWRLTPE
VDQLVFDITP KSTTRLAKLI TGDCNVSALP KAGELPVVIE KEDLEVESLP GFNVAFWAFN
TERIPFNDVR VRRALAHAID KENILRAVYQ KTAEEAVGLL PPLSWAYSAN EKMIDYNPEK
ARELLDEAGV KNLTIDIWAM PVARIYNPNA HKTAELIQAD LANIGVKVNI VNYDWSVFNQ
KLSQHGYDSV LIGWNADNSD PDNFFTPILS CASVGSNSNR SRWCDPAFDH ILNAAKSTTD
REKRARLYQE AEQYVAEQVP MLPFAHATRM VVKQKSVTEA KLTPFGGISF TKTSAQPRLA
SDNKESN
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