| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2496 |
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| Symbol | |
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| ID | 4921342 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2935235 |
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| End bp | 2935918 |
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| Gene Length | 684 bp |
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| Protein Length | 227 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640164087 |
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| Product | phage shock protein A, PspA |
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| Protein accession | YP_001094621 |
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| Protein GI | 127513424 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG1842] Phage shock protein A (IM30), suppresses sigma54-dependent transcription |
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| TIGRFAM ID | [TIGR02977] phage shock protein A |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.307534 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0791052 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGGAATTT TCTCTCGCTT TGCAGATATT ATTAACTCGA ATATCAGCGC ATTACTCGAT
AAAGCAGAAG ATCCAGAAAA AATGGTTCGC CTGATCATCC AAGAGATGGA AGATACGTTA
GTAGAAGTTC GTTCTACCTC AGCCAAGGTT CTGGCAGAGA AGAAAGAGAT CATTCGCCGT
ATCGCTAAGG TGCAGGAGCA GGTTCAGGAT TGGCAGGACA AGGCGGAACT GGCACTGTCG
AAAGACCGTG AAGATCTGGC CAAGGCCGCT CTGCTTGAAA AGCAAAAGGC CAGTGAGCTG
GCAAGCACCC TAGAGCAGGA GCTAGTGGTT GTCGAAGAGC AGATCGCACG CCTGAAAGAG
GAAGTGAACC TGCTGCAAGA GAAATTAGCC GACGCCAAGG CACGTCAGAA GACTATCATT
ATGCGTAAGC AGACTGCGTC TTCTCGCCTT GAGGTGAAGC GTCAGTTGGA CTCGAGCAAG
ATTGACAATG CCATGAGCCG TTTCGAGCAG TATGAGCGTC GTGTCGAAGG TCTTGAATCT
CAGGTGGAAG CCTATGATCT GGGTAACCAG AAGACATTGA ACGATGAATT CGCCGCGCTG
GAAGCTGAAG ATGCCGTTAG TGCAGAGCTA GAAGCCCTGA AGGCTAAGGT AAAAGCAGCG
AAAGCCAAGA AACAGACTAA ATAA
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| Protein sequence | MGIFSRFADI INSNISALLD KAEDPEKMVR LIIQEMEDTL VEVRSTSAKV LAEKKEIIRR
IAKVQEQVQD WQDKAELALS KDREDLAKAA LLEKQKASEL ASTLEQELVV VEEQIARLKE
EVNLLQEKLA DAKARQKTII MRKQTASSRL EVKRQLDSSK IDNAMSRFEQ YERRVEGLES
QVEAYDLGNQ KTLNDEFAAL EAEDAVSAEL EALKAKVKAA KAKKQTK
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