Gene Shew_2471 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2471 
Symbol 
ID4921139 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp2905888 
End bp2907723 
Gene Length1836 bp 
Protein Length611 aa 
Translation table11 
GC content54% 
IMG OID640164061 
Producthypothetical protein 
Protein accessionYP_001094596 
Protein GI127513399 
COG category[S] Function unknown 
COG ID[COG4805] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000555519 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGAACAAAA CGCTTCTCGC ATTGACGATA TCAGCTTTGG TGGCCATGGT GGGCTGCTCA 
GACAAGGAAA CCAGTGCAAG CCAGGCCAAG ACCTCTGCGC CAGAACAGAC TGTGGCGCCT
CAGGTACAAA GCGCCGAGCA GGAATACCTC GCCTTAGTGG ATCGTTATTT CAACGACATG
CTCAAACTAG AGCCAATGTA CGCAACATTT GTCGGCGTCA ATGACTACAA CGACCAATTT
GGCGGCGATC TGACCGAGGA GTATCTCAAG TCGCGTCATG AGCTTAACAG TCGCTACCTG
AAGGCGGTAA AGGCGATAGA TCGCAGCGCC TTACCCGAGC CGCTGCAGCT GAGCTACGAC
ATGTTTACCT ATGATAGAAA CATGGCGCTG GTGTCCGAGA CCTTCCCGTC CTATTTCATG
CCGATGAACC AGTTCTACAG TACAGTCATT ACCATGGTGC AGCTGGGCAG CGGTGAGAGC
GCGCAGCCAT TTAACACGGT TAAAGACTAT GAAAACTGGC TATCGCGTCT ATCGGGCTTC
ATCAACTGGA CTAAGTTGGC CCAGGCGCGC ATGGACGAAG GTATCGCCAG CAAGGTTGTG
TTACCAAGAG TCTTGGTCGA GCGCATCATT CCTCAGCTGG AGGCCCAGTT GGTCGAGCAG
CCGAGTGACA GCCTCTTCTA TGCGCCTATT ACTAATCTGC CAGAGAGCTT TAGTGAAGAG
GAGAAGCAGA AGCTGACCCA GCAATATGAC ACTCTGATCG GCAAAGAGCT GATCCCAGCG
CTGGCATCGC TCAAGCAATA TTTCCAGGAG ACCTATCTGC CCGTGGCCAG AGCCAGCGAT
GGATGGTGGG GACTGCCTAA CGGTAAACTC TGGTATCAGC ATCTAGCCAA CGCTCACACC
ACAACCACTA TGCCTGTCGA TGAGATCCAT CAGATTGGCC TTGATGAGGT GGCCCGTATT
CTCAGTGAGA TGGATAAGGT GAGAGAGCAG GTTGGCTTCA AGGGCGATCT CAAGGCCTTC
TTTGCCTCAC TGTCTTCTGA GCCACAATAC TTCTTTAGTG AGCGTCAGGG GCTGATCGAC
GGCTACATGG TACTGAAGGA AAAGATCAAC GCCGTATTGC CTAACTACTT CAATGTCATG
CCTAAGGCCG ACTATGTGGT TAAGCCGGTT GAGAGCTTCC GCGAGCAGTC AGCGGCCGGT
GCATCTTACG AGGCGCCTGC GGTCGATGGT TCGCGTCCTG GTGTGTTTTA TATCAACACC
TACAATCTGA AGGCACAGCC TAAGTGGGGC ATGACGACAC TGTCACTGCA CGAGGCCGCA
CCTGGGCATC ACTTCCAGAT CGCCATCAAG CAGGAGCTGA CCGGTGTGCC TGAGTTCCAA
CGCTTTAGCG GTTATACCGC CTTCGAAGAG GGCTGGGCCC TGTACGCCGA GTATCTCGGC
ATCGAGATGG GCCTGTTTGA AGATCCTTAC CAGTATTTCG GTAAGCTATC CGATGAAATG
CTGCGCGCCA TGCGTCTGGT GGTCGACACA GGGCTACATG CCAAGGGCTG GAGCCGTGAG
CAGGCGATTC AGTATATGAA GGACAACTCG CCGATGGCCG AGACCGATAT CATCGCCGAG
GTAGAGCGCT ACATGGCGAT CCCAGGTCAA GCTCTTTCAT ACAAGGTGGG ACAGCTGAAG
ATCTTGGCCC TGCGCGCCGA GGCGGAAAAG GCTTTGGGTG ACAAGTTCGA TCTCAAAGGG
TTCCACGATC AGATCTTAAC CTCGGGCTCG CTGCCGATGG CGGTAATGGA GCAAAAAATC
CACCGCTGGA TAAAAGCTCA GGGCGCTAAG GCATAA
 
Protein sequence
MNKTLLALTI SALVAMVGCS DKETSASQAK TSAPEQTVAP QVQSAEQEYL ALVDRYFNDM 
LKLEPMYATF VGVNDYNDQF GGDLTEEYLK SRHELNSRYL KAVKAIDRSA LPEPLQLSYD
MFTYDRNMAL VSETFPSYFM PMNQFYSTVI TMVQLGSGES AQPFNTVKDY ENWLSRLSGF
INWTKLAQAR MDEGIASKVV LPRVLVERII PQLEAQLVEQ PSDSLFYAPI TNLPESFSEE
EKQKLTQQYD TLIGKELIPA LASLKQYFQE TYLPVARASD GWWGLPNGKL WYQHLANAHT
TTTMPVDEIH QIGLDEVARI LSEMDKVREQ VGFKGDLKAF FASLSSEPQY FFSERQGLID
GYMVLKEKIN AVLPNYFNVM PKADYVVKPV ESFREQSAAG ASYEAPAVDG SRPGVFYINT
YNLKAQPKWG MTTLSLHEAA PGHHFQIAIK QELTGVPEFQ RFSGYTAFEE GWALYAEYLG
IEMGLFEDPY QYFGKLSDEM LRAMRLVVDT GLHAKGWSRE QAIQYMKDNS PMAETDIIAE
VERYMAIPGQ ALSYKVGQLK ILALRAEAEK ALGDKFDLKG FHDQILTSGS LPMAVMEQKI
HRWIKAQGAK A