Gene Shew_2461 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2461 
Symbol 
ID4921506 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp2893613 
End bp2895931 
Gene Length2319 bp 
Protein Length772 aa 
Translation table11 
GC content57% 
IMG OID640164051 
ProductMORN repeat-containing protein 
Protein accessionYP_001094586 
Protein GI127513389 
COG category[S] Function unknown 
COG ID[COG2849] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000590481 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGCACTCTA ATCGCGCTTA TTCTGTGTTG TTGGCTGGGT TCGGCCTGGG CGTGTCTAGC 
TTTATTGCCA GCCCCGTGGC GGCGAGTCAG AATCTTTCCA GTCTGATGGT GGAGATCCGC
CAGCAGGAAG GGATCGCCAC CTACTACAAC CTGGCCACCG GCATGGCGCT GAGTGGTCAG
GTGACCCTGG TGCGGGATAA TCAAGGCTAT ACCCTGGGGG AGTTTGCCCA GGGCGTGCCC
AATGGTCGTT GGCAGGTCTA TCTACCTAAT AATCAGAAGT TGGTGGACGG TGAGTATGTC
AGCGGCCTGC AGTCGGGGCG CTGGCAGCTG TTTAGCCCAA ATGGTGAGCT GAGTGAGGAG
CAGTTCTATC TCAACGGCGT GCCAAGCGGC GAGTGGGCCG AATATGATGA CTTGGGTAAC
CTCTATCAGA AGACGGTCTA TGAGGCTGGG GTAAAGACCC AGGTGCTGCG CTATTTCGCC
AGCGGTAAGC TTAAGGCCAA AGAGACCTAT GTCGATAATC TGCGCCACGG AGTGTGGGAG
ACCTACCATG CCAACGGCGT GCTGGCTCAG AGCCAGCAGT ATGCCAACAA CCAGTTGTCC
GGCCCTTCTC TTGCGCAAAA CAGTGAGGGA CAGGTGATTG AGACTGGCAC GCTAGATGCC
AACGGCGAGC GTCAGGGCCG CTGGCAGACG TTCTATGATG ATGGCACGCC CGAGCGTGAC
GAGCATTACG TCGCCGGTCG CCTCCATGGC GAGAGTCTAA GCTACTATCC CAATGGCCAG
TTATCGCTGC AGGGGCAGTA TCGTGAGGAT CTGCGCCAGG GCACTCTGGT GCATTACAGC
GACACAGGGG TCAAGCTCGA GGAGGAAAAC TACCTCGATG GCGAACATGA CGGCATTCAG
CGCTATTTTA ACCGCGCCGG TATCCTGGTG AGCGAGCTGA ACTATAAGGC GGGCTTGCAG
GCGGGCGAGC AGAAGACCTA TTTTGACGAT GGTAAACCCA AGAAGGTGAT TCGCTACCAG
GATCAGATAC TGGCCGACAA CGGGCAATAT CCCTTGCATG GCCTGCAGCA GCGCTTCGAT
CCGGCGGGTA ACCTGCTGGC CACTGAGCAT TACGATATGG GGCTGAAAGA TGGCAAGTTC
GAGACCTATC GTCAGGGCAA GTTGCAGCGT CAGGAGCAGT GGCGTCAGGG CGCGCGCCAT
GGGGATTTCA TCGCCTATTA CGATAATGGC CAGTTGCGCA GCTTGGATCA GTATCAGGAC
AATCGCCAGA CAGGCAAGGC CGAGCGCTAT TTCGACGACG GCACCCTCAA GGAGCGCGGC
ACGCGCATCG ACGGGCAATG GGTCGGCAAA TATGAATCCT TCTATGAGAC GGGTAAACCC
AGAGAACTTA TCCATTACAG CGATGAGAAA ATCGCCGGTC GCAGTCGCTA TCCGCTACAT
GGCGCGTTTT CCCGCTGGTA TGCCAACGGC GATCTCAACG AAGCTGGCGA GTACAAGGAT
GGCGAGAAAC AGGGAACCTG GCGTCAGTAT CGTCAGGGCA TCGTGAGTCG CGAGATGACC
TTCGAGGCGG GCAAGCTAAA CGGGCCTTAC AGCGAGTTCG ATAACGGACG TCGCCGGGTG
ACAGGTCATT ACCTTGAGGA TCGCAAGGAG GGCGAGTGGA CCGAGTATCG CTACCAGGAG
AAAGATCCCA GCTTTGGCCC TATTCCTGAG GGCAACATCT ATCGCGTCAG CCATTACCGC
CAGGACAAAC TCGAGGGCGA GCGGGCCTAT TACAGCTTCA AGCAGGTGCG TTATCGCAGC
GAGCAATATC AGGCGGGTGA GCTCAGCGGC CACTACAGCG AGTATTACGC CAATAACGGT
CAACTCAAGC GCGAGGGCGA GATGCTCAAG GGGGAGCAAG TTGGACTCTG GCAAAGCTGG
TTTGAAGACG GCGTGCTGTC GGAAAGCGGC GAGTATCTTG CGGGTAAACT TAACGGCGAG
TACGCCAAAT ATTACCCCAA TGGCCAGCTA AAGGTGCGCG CCCACTACCA GAATGACAAG
CTGAGTGGCG AGCAGCTCAG CTACTTCCAG ACGGGTAAGC CCCAGGCCAA GGAGCAGTGG
CTGGATGGTC AACGTGAAGG CGAGGCCAGC TATTTTCACG CTAATGGCAA GCAGGCCGAG
CAGGGGGCCT TCCTGCGCTC TCGCAAGGAA GGCTTGTGGC GCGCCTACTG GCCAAGTGGT
GAGCTGCGCA GCGAAGGCAG CTATATCGCG GACCGTCAGG CCGGCGACTG GGCCTTCTAT
GATCAATTCG GCAAGCTGAT CAAGACGGAA CATCACTAG
 
Protein sequence
MHSNRAYSVL LAGFGLGVSS FIASPVAASQ NLSSLMVEIR QQEGIATYYN LATGMALSGQ 
VTLVRDNQGY TLGEFAQGVP NGRWQVYLPN NQKLVDGEYV SGLQSGRWQL FSPNGELSEE
QFYLNGVPSG EWAEYDDLGN LYQKTVYEAG VKTQVLRYFA SGKLKAKETY VDNLRHGVWE
TYHANGVLAQ SQQYANNQLS GPSLAQNSEG QVIETGTLDA NGERQGRWQT FYDDGTPERD
EHYVAGRLHG ESLSYYPNGQ LSLQGQYRED LRQGTLVHYS DTGVKLEEEN YLDGEHDGIQ
RYFNRAGILV SELNYKAGLQ AGEQKTYFDD GKPKKVIRYQ DQILADNGQY PLHGLQQRFD
PAGNLLATEH YDMGLKDGKF ETYRQGKLQR QEQWRQGARH GDFIAYYDNG QLRSLDQYQD
NRQTGKAERY FDDGTLKERG TRIDGQWVGK YESFYETGKP RELIHYSDEK IAGRSRYPLH
GAFSRWYANG DLNEAGEYKD GEKQGTWRQY RQGIVSREMT FEAGKLNGPY SEFDNGRRRV
TGHYLEDRKE GEWTEYRYQE KDPSFGPIPE GNIYRVSHYR QDKLEGERAY YSFKQVRYRS
EQYQAGELSG HYSEYYANNG QLKREGEMLK GEQVGLWQSW FEDGVLSESG EYLAGKLNGE
YAKYYPNGQL KVRAHYQNDK LSGEQLSYFQ TGKPQAKEQW LDGQREGEAS YFHANGKQAE
QGAFLRSRKE GLWRAYWPSG ELRSEGSYIA DRQAGDWAFY DQFGKLIKTE HH