| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2457 |
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| Symbol | |
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| ID | 4921502 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2889519 |
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| End bp | 2890661 |
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| Gene Length | 1143 bp |
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| Protein Length | 380 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640164047 |
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| Product | nuclease SbcCD, D subunit |
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| Protein accession | YP_001094582 |
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| Protein GI | 127513385 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0420] DNA repair exonuclease |
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| TIGRFAM ID | [TIGR00619] exonuclease SbcD |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.529794 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.00000337627 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGAAATTTA TTCATACCTC AGACTGGCAT ATCGGCCGTC AGCTGCACAA TCAGAGCCTG
CTGGACGATC AGCGTCATGT GCTCGATCAG ATAGTCTCCC TGGCTAAGAC CCATGAGGTC
GATGCCCTGA TTGTCGCCGG TGATATCTAC GATCGCTCCG TGCCGCCGGC CAACGCTGTG
GCCCTGCTCG ATGAGGTGCT CAACGAATTT ATCGCCCTTG GGATCGACGT CATCATGATC
GCCGGTAACC ATGACGGCCA TGAAAGGCTG GGGTTTGCCG CGCGCCAGAT GCAGGCCAGC
GGCCTGCACA TCATAGGCCC CTTGGCGCCC AAGGTGAGCC CTATTAGATT AAGCTCAGGC
AGCGGCGATG CCATCTTCTA TCCGCTGCCA TATGCCGAGC CTGCCACCGT TAGACAGCAA
TTGGAATGCG AGGCCAGCAG CCATGAGGAG GCGATGGTCG AGCTGCTCAA GCAGGTGCAG
GACCATGACA GTCAGGGATT GCCTAAGGTG GTGATAGGCC ACTGTTTCCT CGACGGCGGC
AGCGAATCTG ACTCAGAGCG ACCACTGAGT ATCGGCGGTG CAGACAAGAT CTCGCCTAAG
CATTTTGCGC CCTTCGACTA TACGGCCCTG GGCCATCTCC ATGGCCCGCA ATATAAGGGG
GCCGAGCAGG TGCGCTACTC TGGCTCCATC CTCAAATACT CCTTTAGCGA GCAGCATCAG
AACAAGTCGG TAACTTTGGT GGAGCTCAAT GCAGGCAGTC CGGCAAATAT GACACTGCTA
CCGCTCAGCC CGCTTCGCGA TGTACGCATC ATAGAGGGCG CCCTCGCAGA CTTGTTGCAG
CAAGGGGTAA AAGACCCCGG CCGAGAGGAT TATCTGATGG TGCGCCTGCT GGATAAACAC
GCCATCTTAG ATGCCATGGG TAAGCTCAGA AGCGTCTATC CCAATGTGCT GCATCTGGAG
CGCACTGGCC TGATGGCCAG TAACCAGCAG CTGGCCATCG CCTCGGATCA CATCAAGAAA
GGTGAGCTCG AGATGTTTAA AGATTTCTTC ACTCAGGTCT CCGGCGATCC ACTTAACGAG
GCGCAACTTG AGCTGATCAC CCAGGCCCTG GATGAGCTGC ACAAAGGGGA GGCGGCGCAA
TGA
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| Protein sequence | MKFIHTSDWH IGRQLHNQSL LDDQRHVLDQ IVSLAKTHEV DALIVAGDIY DRSVPPANAV
ALLDEVLNEF IALGIDVIMI AGNHDGHERL GFAARQMQAS GLHIIGPLAP KVSPIRLSSG
SGDAIFYPLP YAEPATVRQQ LECEASSHEE AMVELLKQVQ DHDSQGLPKV VIGHCFLDGG
SESDSERPLS IGGADKISPK HFAPFDYTAL GHLHGPQYKG AEQVRYSGSI LKYSFSEQHQ
NKSVTLVELN AGSPANMTLL PLSPLRDVRI IEGALADLLQ QGVKDPGRED YLMVRLLDKH
AILDAMGKLR SVYPNVLHLE RTGLMASNQQ LAIASDHIKK GELEMFKDFF TQVSGDPLNE
AQLELITQAL DELHKGEAAQ
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