| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2456 |
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| Symbol | |
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| ID | 4921501 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2886466 |
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| End bp | 2889522 |
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| Gene Length | 3057 bp |
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| Protein Length | 1018 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640164046 |
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| Product | SMC domain-containing protein |
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| Protein accession | YP_001094581 |
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| Protein GI | 127513384 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0419] ATPase involved in DNA repair |
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| TIGRFAM ID | [TIGR00618] exonuclease SbcC
[TIGR03185] DNA sulfur modification protein DndD |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.053709 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.00000627318 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGAGACCAC TGCGACTGAC CATGACCGCC TTCGGCCCCT TCGCCGACGA GCAAATTATA
GATTTTGCCG CCCTGGGCAG TAACCCGCTG TTTCTGATCA ACGGCCCCAC GGGGGCGGGT
AAGACGACGA TTCTCGATGC CATCTGTTTC GCCCTCTATG GCAAGACCAC GGGGGATGAG
CGCGAAGGCA CCCAGATGCG CTGCGACATG GCCGATGAGC AGAGGCTGAC TCAGGTCAGC
TTCGAGTTTG AGCTCGGCAG CACGCGTTAT CTTATTCGCC GCGTGCCCGA GCAGCCAAGG
GCCAAGAAGA GTGGTGAGGG GGTGACGCTG CAAAAGAGCG AGGCCCAGCT GTCTCGCGTC
GACACAGATG GCAGCGAGAC ATTGCTGGTG GCGGCCAAGG TGTCTGATGC CACCGCGCAG
ATAGAGCAGC TGACCGGCCT GGATGTGGAT CAGTTCCGCC AGGTGATGGT GCTGCCCCAG
GGCAAGTTTC GCGAGCTCTT GATGGCCGAC TCCAAGGCCA GGGAGAAGAT ATTCAGCCAG
CTGTTTCAGA CCCATATCTA TCGCCGCATC GAGGAGCGCC TCAAGCAGCA GGCAGCCGGG
ATCCGCCGCG ACGTTGAGGC GATGCGTAAT CGCCGTGGTG GTATTCTGGA AGGCGCCGAG
TTAGCAAGCG ATCAGGCACT AATCGAGGAG CAGGCGCTCA TCGCTCCCGA GCTGGAACTT
GCCCAAGCGC ACAAGCAGCA AGCCGAGCAG GCACTGCTGA CGGCTAACCA GAATCTAGAC
AAGGGCCTCA AGCTGCAGAG TGATTTCAAT CGCCTGCAGG CGCTGCAAAG CGAGGGCGAG
GGGCTAAAGG CTCGCCAGCT TGAGGCGACT TTGTGGCAAC AGAGACTGCA GGCGGCCGGT
CGAGCCAATA GCCTGAGCCC GCTTTACCGG GCGATGCAGT CGCGTCTCGG CGAGCAGCGC
TCGGCAAGCC AGCATTTAGA TGAGTGTCAG CAGATTCATG CTAGCGCCGA GCAGGCATTG
AATCAGAGCC AGCAGGCCTT CGAGCAGCTG GGCGCGCTTG AGCAAGAGCA GCTGAGCCAG
CAGCAGCGCC TGACCCAGCT CGAGGCCTTG GCGCCTCAGC TAGAGCAGCT CAATCAATTG
AGTGAGCGAC TCGCCGATGG CCAAGCCAAG ATGCAGGCGG CCGAGGCGAG TGGTAAGCAG
AGCGCCAAAC AGTTAGACGA GCTTAATCAG GCCCGCCAGG AGATAGTGAG TCGCCGCGAG
ATCCTAAAAC GTGACGCCGA GCCGCAGCTC GCGTTGCAAC AATCTCTGAG CGACGGCCGC
GCCCAGCTCA AAGTGTTTGA GCGTTGGCAG CAGCAAGGGC TGGAGATCGC GGCCCTCGAG
CAAAAGTTAA CGGCGGCTAA GACAGCAGGC AGTGAGCTTG CCGAAAAGCA CAAGCAGGCA
ATCGATGCCC ATAAGCGTCT GGAGCTTAGC TGGCATCGCG GTCAGGCCGC GCGCCTGGCG
GCAGAGTTAT CACCGGGCGA GCCTTGTCCC GTCTGTGGCA GCCTGGAACA TCCAGAGCCT
GCCATGGGCG AATTTGATCT GCCGAGCGAC GAGGCGCTGG CCCAGGCTAA GCAGCGAGAG
AGCGACGCGC TCAATTTGCT GCATCAGGCC AGAAGCGAGT ATAAGCTGCT CCAGCAATCC
CTGTCGAACC TGCAACTAAG TGCATCTCTG CTACAGGAGG AGCTTGGCGA GGCGGCAGGC
TTGTCGTTTG ATGAGCATCA GGCGCGACTT GCAGAGCTCA GCGACGGGTT CGAGCGGGCC
AAGGCGGCGC AGCAATCACT TGCCCAGTTA GAGACTCAGC TCGAGCGCAG CGAGCACCAG
GGACGAGAAC TACAAACCGC GCTGGATGAA GCGCGTGCCC ACTACGGCAA ACTGGCCGAG
CAGCTGGCCA GCGACAAGGG GCAGTATCAG CAGATAAGTG CGGCCATTCC ACAGGGCTTT
AGCGACGTTG CAACGCTCAG CACGGCCATT GCCGATCTTA CCAAGACTAT CGATGAGCTT
AAGGCGCGCC AGCAATCGGT GAGGGCGGCC CATGCCAAGG CGGAGCAGGA TAATGCGGCG
GCCAAGGCCT CGCTGGAGGC GGCCAGCCGT CGTCTTGGTG AGGTGAATGC CCTTGCGGAG
CAGGAGAGCC TGAGTTTCCA ACAGGCGCTA GCGACTTCGG AATTTGAAAG CGTTGCCGCC
TTCGAGCAGG CCTGCCTGAC CGAGGCCGAG CAGGCCGAGT TGTCCAATCA GATTAAGGCG
TTCGAGCAGG CGCTTATCAC TCATCAGGCC AACCTGTCTC AGCTCCAAGA GGCCTTAGCC
GGTTGTGAGG CGCCGGATAT GAGTGCGCTC GAGCAGCAAA AAATGGACGC CGAGCAGGTG
ATGCAGCAGG CCTTAGCTCA GTGGCAGAAG GTGAGCGCCA GGGCGGCTCA GCTAAGTCAA
ACCCAGGAGC AGCTCAAGGC GCTGGATCTT AAGGCCGGCG CTCTCGAGCA GCAATACGCC
GTGGTCGGCA CCCTGGCCGA TGTGGCCAAT GGCAACACGG GTAACAAGAT AAGCCTGCAA
CGCTTCGTGC TGAGCGTATT GCTCGATGAT GTCTTGCTGG AAGCCAGCCA CAGGTTGCAG
CTGATGAGTA AGGGGCGCTA TCGCTTGCTG CGCAAGGAGG AGCGGGCCAA GGGTAACAAG
GCCTCTGGCC TTGAGCTGGA GGTGGAAGAT GCTTACACCG CCAAGGTGCG CTCTGTGGCG
ACCCTGAGTG GCGGCGAGAG CTTTATGGCG GCCCTGTCTA TGGCCCTTGG GCTGTCGGAT
GTGGTGCAGG CCTATGCCGG CGGCATTAAG CTCGATACCC TGTTTATCGA TGAGGGCTTC
GGCAGCCTGG ATCAGGACTC CCTCGAGCTG GCCATCAGAA CCCTGATGGA TCTTCAGTCT
GCGGGTCGCA TGGTGGGGGT GATCTCCCAT GTGACCGAGA TGAAGGAGCA GATCGCTAGC
CGCATCGATA TCCTTAAGAG TGCCGAGGGT AGCGAGATTA AATTAGTTTT ACCTTAA
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| Protein sequence | MRPLRLTMTA FGPFADEQII DFAALGSNPL FLINGPTGAG KTTILDAICF ALYGKTTGDE
REGTQMRCDM ADEQRLTQVS FEFELGSTRY LIRRVPEQPR AKKSGEGVTL QKSEAQLSRV
DTDGSETLLV AAKVSDATAQ IEQLTGLDVD QFRQVMVLPQ GKFRELLMAD SKAREKIFSQ
LFQTHIYRRI EERLKQQAAG IRRDVEAMRN RRGGILEGAE LASDQALIEE QALIAPELEL
AQAHKQQAEQ ALLTANQNLD KGLKLQSDFN RLQALQSEGE GLKARQLEAT LWQQRLQAAG
RANSLSPLYR AMQSRLGEQR SASQHLDECQ QIHASAEQAL NQSQQAFEQL GALEQEQLSQ
QQRLTQLEAL APQLEQLNQL SERLADGQAK MQAAEASGKQ SAKQLDELNQ ARQEIVSRRE
ILKRDAEPQL ALQQSLSDGR AQLKVFERWQ QQGLEIAALE QKLTAAKTAG SELAEKHKQA
IDAHKRLELS WHRGQAARLA AELSPGEPCP VCGSLEHPEP AMGEFDLPSD EALAQAKQRE
SDALNLLHQA RSEYKLLQQS LSNLQLSASL LQEELGEAAG LSFDEHQARL AELSDGFERA
KAAQQSLAQL ETQLERSEHQ GRELQTALDE ARAHYGKLAE QLASDKGQYQ QISAAIPQGF
SDVATLSTAI ADLTKTIDEL KARQQSVRAA HAKAEQDNAA AKASLEAASR RLGEVNALAE
QESLSFQQAL ATSEFESVAA FEQACLTEAE QAELSNQIKA FEQALITHQA NLSQLQEALA
GCEAPDMSAL EQQKMDAEQV MQQALAQWQK VSARAAQLSQ TQEQLKALDL KAGALEQQYA
VVGTLADVAN GNTGNKISLQ RFVLSVLLDD VLLEASHRLQ LMSKGRYRLL RKEERAKGNK
ASGLELEVED AYTAKVRSVA TLSGGESFMA ALSMALGLSD VVQAYAGGIK LDTLFIDEGF
GSLDQDSLEL AIRTLMDLQS AGRMVGVISH VTEMKEQIAS RIDILKSAEG SEIKLVLP
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