Gene Shew_2455 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2455 
Symbol 
ID4921500 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp2884964 
End bp2886220 
Gene Length1257 bp 
Protein Length418 aa 
Translation table11 
GC content55% 
IMG OID640164045 
Productpeptidase M23B 
Protein accessionYP_001094580 
Protein GI127513383 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0739] Membrane proteins related to metalloendopeptidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0186992 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000341195 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGTCTCAAT CCCGTATCAT GGCATTACCC TCGCCCCATA AGAAGATCTT ATTGGCGGCC 
GGGCTGGTCG TGGGCGCGGC GCTGCTTTGG CCAAGCCAGA AACAGGCCCT GCCACAACGC
ATTCCGGTGG CGCTGGATAT TGAGTCTCTG GTGACTAACC TCCACCTGGG CGACGAAGCG
GTCGAAACCG TGTCTCATGC TGATTTTGTT AAGACCATAG TATCCGGTGA TACCCTCAGT
GGCTTGTTTG TCGAAGCCAA TGTGGATCAG CAGACCATGT ACAAGGTGTT AGAGGCGGAT
CTGAATATCC TGGCCCTCGA TACCCTCAAA CCCGGCAACA TCATACGTTT CTGGCTCGAT
GACTCGGGTC AGCTGGAGAA ACTCGAACTC TACTTCAATG CCGCGCGCCA GGTGGTGTTT
AGCCGTTACG AGGAGGGGGG ATTCAGCGTC GATGAGATCA ATATCGAGGG GATCTGGCAG
GACAGGGCCT TAAGCGGTGA GATCCAGGGC TCCTTCTATC TGTCGGCTCA GCGTATCGGC
CTGAATGCCG GCGAGATTCA GCGCATCGAG ACCCTGCTGA AAGAGAAGCT GAATTTTGCT
CGTGATCTGC GCGCGGGCGA CCGATTCTCT GTACTTAAGA GCGATCAATA TATCGATGGT
GAGGTGACGG GTAATAGCGA TATTCTCGCC ATTACCATAG AACGTGGCCG CAGCACGATC
AACGCCTACC AAAATAGCGA CGGCAACTTC TATGACGATC AGGGCCGCAG CCTGGCAAGG
GCCTTCCAGC GTGTGCCGCT ACAGAAGAAC TACCGTGTCA GCTCGCGCTT TAATCGCCAT
CGTCACCATC CGGTTACGGG TCGCACCGCG CCCCATAACG GCACAGATTT CGCCACGCCG
ATTGGCACTA AGGTGATAGC CCCTGGCGAT GGCATCGTCT CTTTGGTGAC CGACCATAGA
TATGCGGGTA AATATGTGGT GATCGATCAC GGCAACAAGT ACCGTACCCG TTATCTGCAT
CTCTCGAAGG CCTTGGTGCA CAAGGGACAG AGGGTGTCTC GAGGCCAGGT GATCGCCCTG
TCGGGTAAGA CGGGCCGCAT CACAGGGCCA CATCTGCACT ATGAGTTTCA TATCAATGGC
CGCCCCGTGG ATCCTATGAA GGCGGATATT CCTATGGCGA GTAAGCTGTC GAAGAAGCAG
ATGGGCGAGT TTGCTCAGCT GGTCAAGGTG CGCCAGATGA TGATGGGCCA GAGCTAA
 
Protein sequence
MSQSRIMALP SPHKKILLAA GLVVGAALLW PSQKQALPQR IPVALDIESL VTNLHLGDEA 
VETVSHADFV KTIVSGDTLS GLFVEANVDQ QTMYKVLEAD LNILALDTLK PGNIIRFWLD
DSGQLEKLEL YFNAARQVVF SRYEEGGFSV DEINIEGIWQ DRALSGEIQG SFYLSAQRIG
LNAGEIQRIE TLLKEKLNFA RDLRAGDRFS VLKSDQYIDG EVTGNSDILA ITIERGRSTI
NAYQNSDGNF YDDQGRSLAR AFQRVPLQKN YRVSSRFNRH RHHPVTGRTA PHNGTDFATP
IGTKVIAPGD GIVSLVTDHR YAGKYVVIDH GNKYRTRYLH LSKALVHKGQ RVSRGQVIAL
SGKTGRITGP HLHYEFHING RPVDPMKADI PMASKLSKKQ MGEFAQLVKV RQMMMGQS