| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2454 |
|---|
| Symbol | |
|---|
| ID | 4921499 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 2884383 |
|---|
| End bp | 2884889 |
|---|
| Gene Length | 507 bp |
|---|
| Protein Length | 168 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640164044 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001094579 |
|---|
| Protein GI | 127513382 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1451] Predicted metal-dependent hydrolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.542737 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.00000219257 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGTCATCAC TGCCCTATCT GCAAGGCTAT CGGCCCGAGC TTATCAGCCA GGTCAAGGAA
CTGATCGAGA CTAATCGACT GAGAAGTGTC CTCGAACGCC GCTATCCAGA CAGTCACACG
ATCCGCAGCG ACAAGGCCCT GTACGACTAC ACCATGGCGC TGAAGAACCG CTATCTCAAG
AAGTCTTCGC CCCTGAGTAA GGTGATCTTT GACGATAAGA TCACTCTCAA GAAGCAGGCC
CTGGGATTGC ACAGCTATGT CGCCAAGAAT CACGGCGGCA AGACCAAGTC GAAGAATGAG
ATCCGCATCG CCGCGCGCCT CAAGGAGGTG CCCGAGCCCC TGCTGCGTAT GGTGGTGGTA
CATGAGCTGG CGCATCTTAA AGAGAAGGAT CACAACAAGG CCTTCTATCA GCTCTGCTGC
CATATGCAGG GCGACTACCA TCAGCTGGAA TTTGACCTGC GGCTATGGCT CACCATGCTG
GATCTCGAGG CCCAAGAGAA AGGCTAA
|
|---|
| Protein sequence | MSSLPYLQGY RPELISQVKE LIETNRLRSV LERRYPDSHT IRSDKALYDY TMALKNRYLK
KSSPLSKVIF DDKITLKKQA LGLHSYVAKN HGGKTKSKNE IRIAARLKEV PEPLLRMVVV
HELAHLKEKD HNKAFYQLCC HMQGDYHQLE FDLRLWLTML DLEAQEKG
|
|---|
| |