| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2452 |
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| Symbol | |
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| ID | 4921497 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2882168 |
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| End bp | 2883550 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640164042 |
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| Product | DEAD/DEAH box helicase domain-containing protein |
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| Protein accession | YP_001094577 |
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| Protein GI | 127513380 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.00000327397 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGTATAATG CGCCCCTATC TATATTTCGG AGCACAGCAT TGCAATTTTC AGATTTTTCA
CTCGATAAAC GTCTACTGAC CAGCCTTGAA CACATGGGCA TCGACACGCC GACCGAGATC
CAAACGCAAT CGATACCCGT AGGCTTATCG GGAAGAGATC TTATGGCATC GTCTAAAACG
GGCTCGGGCA AGACCCTGGC CTTCCTGTTG CCAGCAATGC AGCGCGTCAT CGCCACCAAG
GCGCTAAGCA AGCGCGATCC CAGGGTGTTG ATCCTACTAC CGACCCGAGA GCTGGCCACC
CAGGTCTACA GTCAACTGCG CCTGCTGGTC GCCAACACCC AATACAAGGC GATCAAGATC
CTCGGCGGTG AAAACTTTAA CGATCAGGCC AAGGCCCTGG CGAGAGACCC CCACTTCGTG
GTGGCAACAC CGGGCCGTCT GGCGGATCAC TTAGCTCAGC GTCACCTGTA CCTCAACGGA
CTCGAGCTGC TTATCCTGGA TGAGGCCGAC CGCATGCTGG ACCTGGGCTT CGCCGAGCAG
CTCAGGGCCA TCAACCAGGC CGCCGATCAC AAGCGTCGCC AGACCCTGAT GTTCTCAGCA
ACCTTAGATC ACGGTCAGAT CAACGAGATT GCCGCCGAGC TGCTCAAGGA GCCGGAGCAT
GTGGCCATAG GCGCCTCCCA TGTGGAGAAC CAGGATATCG CCCAGAAGAT CTACCTGTGC
GACAACCTGA GCCACAAGGA GCAGCTGCTC ACCCGTCTGC TACAGCTTGA GCCCCACAAG
CAGGTGATCA TCTTCACCGC GACCCGTGGC GATACCGACC GCCTGGCCGG CGTGCTGGCC
GAACAGGGCT TTAGCACCAG CTCCCTCAGC GGCGAGCTGA AACAGGCGGC GCGCAACCAG
ATCATGGACC AGTTCAGCCG TGGTCAGCAG CAGATATTGG TCACCACAGA CGTGGCCTCC
CGCGGCTTGG ATCTGCTTAA CGTATCCTTG GTGATCAACT TCGACATGCC AAAGTTTGCC
GAAGAGTATA TTCACCGTAT CGGTCGTACC GGCCGCGCCG GCGCCAAGGG CGATGCTATC
TCCCTGGTCG GGCCGAAAGA CTGGGTCAAC TTCAAGCAGG TACAAAACTT CCTGCGTAAA
AGCTTTGAGT TCAGCGAGCT GGAGGAGTTG GCGCCTAAGT TTAAGGGGTT AAAAGACAAA
CCGAGCCAGG AGAAGCGCTT AGGTAAGCAG CAGGCGAAAC CTAAGGCCAA GACGGCTAAG
GCCGCCAGCA GCACCAAGCC GACTAAGCCG CGGGATAAGC GCTTTATCAC AGGCGTCGAT
GTGGGCGATG CGCCAATGCT TAGAAAGCCC AAGGCGAAAC TGCAGGATAC GCCTGAAGAT
TAA
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| Protein sequence | MYNAPLSIFR STALQFSDFS LDKRLLTSLE HMGIDTPTEI QTQSIPVGLS GRDLMASSKT
GSGKTLAFLL PAMQRVIATK ALSKRDPRVL ILLPTRELAT QVYSQLRLLV ANTQYKAIKI
LGGENFNDQA KALARDPHFV VATPGRLADH LAQRHLYLNG LELLILDEAD RMLDLGFAEQ
LRAINQAADH KRRQTLMFSA TLDHGQINEI AAELLKEPEH VAIGASHVEN QDIAQKIYLC
DNLSHKEQLL TRLLQLEPHK QVIIFTATRG DTDRLAGVLA EQGFSTSSLS GELKQAARNQ
IMDQFSRGQQ QILVTTDVAS RGLDLLNVSL VINFDMPKFA EEYIHRIGRT GRAGAKGDAI
SLVGPKDWVN FKQVQNFLRK SFEFSELEEL APKFKGLKDK PSQEKRLGKQ QAKPKAKTAK
AASSTKPTKP RDKRFITGVD VGDAPMLRKP KAKLQDTPED
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