| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2439 |
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| Symbol | |
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| ID | 4921595 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2866545 |
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| End bp | 2867561 |
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| Gene Length | 1017 bp |
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| Protein Length | 338 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640164029 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001094564 |
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| Protein GI | 127513367 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000111994 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00120392 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAAGTAC AACACACACT TTCCATCGGC ATATTGCTGT CACTCGTCAG CCTGGTATCT
GGCGCCAGCG AACTGCCCAC CATGACGGTG GCCAAACACT CTCAGCCCCA GTGGATCACC
TTAGATGCAC AACTTGAGGC GGTAAAATCG GCGACGGTGT CGGCGCAAAC CTCGGGCCGC
ATCATCAAGA TCAACTATGA CGTCAACGAT ATCGTGCCCC AGGGCGCATC CTTGCTGGAG
ATCACCAGCA AGGCCCAGGG CGCCGAGCTG GCGGCCGCCG AGGCCGACTT TGCTCGCGCC
CAGGCCCAAA ACGAAGAGGC GCAGAAACAG CGTAAGCGTT ATGAACAGCT GTTCCCCCAA
GGCGCCATCT CCCAAGGCGA TATGGATCAA GCCATCGCCA ACGCCCGCGC CTCGGCCCAG
GCCGTCAGCG CTGCGAGAGC CCGTATCATC CAGGCCAACG AGTCTCTGCA GTACACCACG
GTCAGTGCCC CCTTTGCCGG CGTGGTCACC AAGCGCCATG TGGAAGTGGG CGAAACCGTG
TCTCCCGGCC AGGCACTGCT GAGCGGCTTT GCCACCGAGC ATATGCGTGC CGTCACCCAT
GTGCCCCTGC GTTACATAGA TGCGCTGCGC GCCAATCCTA AGATGAAGCT TGTGCTGACC
AACGGCAAGG AGCTCGAATC GGACGCCCTG ACCATCTTCT CTTTCGCCGA TGCCAAGAGC
CACAGCTATA AGACACGTAT CGACCTGCCA CCGCAGGAGC CCAACCTGAT GCCGGGCATG
TGGGTCAAGG CCAGCTTCAA CGCCGGCGAT CGCAATACGC TGACCATCCC CGAGTCTGCG
GTGATCTACA ACAACGAACT GAGTGCGGTC TATCTGATGC AGAACAATCA GTTCATGCTC
AATCAGGTGC GCCTGGGCAA TAAACAGGGC GATAGCTTCG AGGTGCTTTC GGGCCTGAGT
GATGGCGACA CCATCGCCGT CGACGCCTAT CAAGTGCTGC TGAAGCTGAA ACAATAG
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| Protein sequence | MQVQHTLSIG ILLSLVSLVS GASELPTMTV AKHSQPQWIT LDAQLEAVKS ATVSAQTSGR
IIKINYDVND IVPQGASLLE ITSKAQGAEL AAAEADFARA QAQNEEAQKQ RKRYEQLFPQ
GAISQGDMDQ AIANARASAQ AVSAARARII QANESLQYTT VSAPFAGVVT KRHVEVGETV
SPGQALLSGF ATEHMRAVTH VPLRYIDALR ANPKMKLVLT NGKELESDAL TIFSFADAKS
HSYKTRIDLP PQEPNLMPGM WVKASFNAGD RNTLTIPESA VIYNNELSAV YLMQNNQFML
NQVRLGNKQG DSFEVLSGLS DGDTIAVDAY QVLLKLKQ
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