| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2433 |
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| Symbol | |
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| ID | 4921654 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2860357 |
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| End bp | 2860920 |
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| Gene Length | 564 bp |
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| Protein Length | 187 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640164023 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_001094558 |
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| Protein GI | 127513361 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0111357 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTAGCG TGATACGAAA TAAAAAACCG AAAAAGTCGG TCAATAGAGA CATGCTGAAT
AAACAACGAC GATACGATAG CCTTGTCAGG GCACTTCATG GCGACCTGTT CCGCTACGCC
TTCTGGCTGT GCGGGGATAA ACATATCGCC GAAGATATCA CCCAAGAAAC CTTCTTACGC
GCCTGGCGCT CCTTGGAATC ACTCAAAGAT GACAAGGCCG CCAAGGCTTG GCTGATCACC
ATATTACGGC GTGAAAACGC CCGCCGCTTC GAGCGTAAGC AGTTTGACTA CTCGGATGTA
GAGCAGGCCG ATATCGCCGA CCATATCTCT TCCTCTAGCG AAGAGAGCAT GGAGCAGCAT
ATGCTCAGGC GCCAGATAGC CAAGCTCGAG GCCGAATACC GCGAGCCCTT GATCCTGCAG
GTGATCGGCG GCTTCAGCGG CGAAGAAATT GCCGATATCT TAGATCTGAA TCGTAATACC
GTAATGACTC GCTTATTTCG CGCCAGAAAT CAGCTAAAAG AGATACTCGA TGACACGCAA
ACCAGGGGGC GCTCTAATGG ATGA
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| Protein sequence | MFSVIRNKKP KKSVNRDMLN KQRRYDSLVR ALHGDLFRYA FWLCGDKHIA EDITQETFLR
AWRSLESLKD DKAAKAWLIT ILRRENARRF ERKQFDYSDV EQADIADHIS SSSEESMEQH
MLRRQIAKLE AEYREPLILQ VIGGFSGEEI ADILDLNRNT VMTRLFRARN QLKEILDDTQ
TRGRSNG
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