Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2431 |
Symbol | |
ID | 4921652 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 2856557 |
End bp | 2858638 |
Gene Length | 2082 bp |
Protein Length | 693 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640164021 |
Product | TPR repeat-containing protein |
Protein accession | YP_001094556 |
Protein GI | 127513359 |
COG category | [R] General function prediction only |
COG ID | [COG5271] AAA ATPase containing von Willebrand factor type A (vWA) domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0167557 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCCATT TTCTCCGTCC CGAATGGCTG CTGGCCCTCA TCCCCCTGGC GCTATTACTC TGGCTGCGAA AGCGCCAGCG ACATCAGGCC TCGAGCTGGA ATCGCTATAT CGCGCCGCAC CTGGCTAAGG TGTTAGTGAG CGGTCAGGCA AGCAACAAAA AACAACACCT GGGCCTCATC GCCTTTATCT GGCTCGTTAG CGTCCTGGCT CTCTCTGGCC CGGCACTGAC CAAGCAGCAA CTACCTGTAT TTGAAGCCAA CCTGGGCCGG GTGATAGTGA TGGATATGTC GCTCTCCATG TACGCCACCG ATCTGGCGCC CAACAGGCTG ACTCAGGCCA AGTTCAAGGC AACGGATCTG ATTAAAAGCC TCAAGGAGGG TGAGACGGGT CTTGTGGCCT ACGCCGGCGA CGCCTTTACC ATCAGCCCGC TGACCCGGGA CAAATCAACT CTACTAAACC TGCTGCCAAC CCTGTCGCCG GAGATCATGC CTGTGCTGGG CTCCAACCTG CCAGCGGCGC TAGATCAGGC TAAGCAGCTG CTTGTCCAGG GCGGTCACCT CAAGGGCGAG ATCATCTTGC TGGCCGATGG CGTGAATCCG GACCAAATCG GCGAAGCCAA ATCGATACTG GACGATACTC AGTATCGTCT CTCCATCATC GCCATGGGGA CAAACCAGGG CGCCGCCATC CGCTTGCCGG ATGGACAACT GATGCGTGAC CAAAGCGATC AGGTGGTGGT CAGTCAGACG GATCTCAGCC AGCTTAATAG TTTAATTGGC AACAGCGGCG GCAAGTTGTT TGCCTACCGC GCCGATGGCA AAGATCTTGA GTCACTGACC CAAAGCTTAA GCCAGGAGAG CGATGCCAAG ACCTCAGATC GCCAAGGGGA AGCCTGGCAA GATCTCGGCC CCTATCTGGC CCTGCTCCTG CTGCTGCCGG CGCTGCTGAG TTTCAGACAC GCCTTCGCCG CGCTTGCCTG TTTAGTTATT CTCGCCCCGA GCCCAGAAGC CCAGGCTGCC AGTTGGCAAC ATCCCTTCAG CACAGACGAT CAGCGGGCGA TGCAGGCCTA TCAAGCGCAA GACTTTCAAG GCGCGGCAGA GCAATTTACC TCGCCCCAGT GGAAGGCCGC ATCCCTGTAC AAGAATGGTG ATTATCAAGA GGCGCTCAAG CTTTTCGAGC AGGATGACTC GGCGAGTGGC CTGTTTAATC AGGGCAACAG CCTGATGCAG CTCAATGATC TCGACAAGGC CATCGAGCGT TATCAGCAGG CGCTTAAGAA AGACCCTCAG CTTACTCAGG CCGAGCAAAA TCTTGAGTTG GCCGAGCAGC TAAAGCAGCA ACAGCAAGCT AGCCAAGATC AAGGCCAATC TGATCAGAAA AAGTCCGAGC AGAATCAATC TGATCAAGAC CAGTCGAATC AGGACTCAAA TAAGCAAGAT AAGTCCCAAC AAGACGGCGC CGGGCAAAAT CAAGGCCAGC AACAAGGCCA AGGCGATCAG CAATCGGGCC AGGGCTCGAG AGGCCAGCAG TCTCAAGGCC AGAATGGTCA ACAAGAAGAT GAGCAAGGCT CTAACCAGCA AGGCTCTGAC AAGCAAGGCT CTGACAAGCA AAGCGCTAGC CAAGAAAGCC CTGAGCAAGA AACTCCCGAG CAACAAGCCT CTGCCGAGCA GGAAGCCAGC CAGGATGGTC AGTCGCAAAA CCAGCAGACA GGCGCCGCTA ATGACGCTCA GATGAGCGCC GATCCGGCCA AAGACGCCAA AAATCAAATG GACGCCAACG CAAATCAATC TGACGCTGGC CAGCAGATGG GACAAGGCCA ACAGCCGCAA GACGAACAAG AGAGCACTCA AGCCCAGGCC GCGAATATGA CCCAGGGCAA ACCCGGCGAG GGCGATGAGC AAGGCGAGCC GGTAGCCGCC GCAACCAACG CCATTGCGCC AGAAGATCTG CCCCCCGAGA TGCAGCGCGC CCTTACCGGG GTGATAGACG ACCCTCAGGT CTTGCTGCGC AACAAGATGC AACTGGAATA TCAAAAACGC CGCCGTCAGG GGGCGACCAT AAAGGACAAT CAACAGTGGT AA
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Protein sequence | MIHFLRPEWL LALIPLALLL WLRKRQRHQA SSWNRYIAPH LAKVLVSGQA SNKKQHLGLI AFIWLVSVLA LSGPALTKQQ LPVFEANLGR VIVMDMSLSM YATDLAPNRL TQAKFKATDL IKSLKEGETG LVAYAGDAFT ISPLTRDKST LLNLLPTLSP EIMPVLGSNL PAALDQAKQL LVQGGHLKGE IILLADGVNP DQIGEAKSIL DDTQYRLSII AMGTNQGAAI RLPDGQLMRD QSDQVVVSQT DLSQLNSLIG NSGGKLFAYR ADGKDLESLT QSLSQESDAK TSDRQGEAWQ DLGPYLALLL LLPALLSFRH AFAALACLVI LAPSPEAQAA SWQHPFSTDD QRAMQAYQAQ DFQGAAEQFT SPQWKAASLY KNGDYQEALK LFEQDDSASG LFNQGNSLMQ LNDLDKAIER YQQALKKDPQ LTQAEQNLEL AEQLKQQQQA SQDQGQSDQK KSEQNQSDQD QSNQDSNKQD KSQQDGAGQN QGQQQGQGDQ QSGQGSRGQQ SQGQNGQQED EQGSNQQGSD KQGSDKQSAS QESPEQETPE QQASAEQEAS QDGQSQNQQT GAANDAQMSA DPAKDAKNQM DANANQSDAG QQMGQGQQPQ DEQESTQAQA ANMTQGKPGE GDEQGEPVAA ATNAIAPEDL PPEMQRALTG VIDDPQVLLR NKMQLEYQKR RRQGATIKDN QQW
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