Gene Shew_2431 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2431 
Symbol 
ID4921652 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp2856557 
End bp2858638 
Gene Length2082 bp 
Protein Length693 aa 
Translation table11 
GC content57% 
IMG OID640164021 
ProductTPR repeat-containing protein 
Protein accessionYP_001094556 
Protein GI127513359 
COG category[R] General function prediction only 
COG ID[COG5271] AAA ATPase containing von Willebrand factor type A (vWA) domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0167557 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCCATT TTCTCCGTCC CGAATGGCTG CTGGCCCTCA TCCCCCTGGC GCTATTACTC 
TGGCTGCGAA AGCGCCAGCG ACATCAGGCC TCGAGCTGGA ATCGCTATAT CGCGCCGCAC
CTGGCTAAGG TGTTAGTGAG CGGTCAGGCA AGCAACAAAA AACAACACCT GGGCCTCATC
GCCTTTATCT GGCTCGTTAG CGTCCTGGCT CTCTCTGGCC CGGCACTGAC CAAGCAGCAA
CTACCTGTAT TTGAAGCCAA CCTGGGCCGG GTGATAGTGA TGGATATGTC GCTCTCCATG
TACGCCACCG ATCTGGCGCC CAACAGGCTG ACTCAGGCCA AGTTCAAGGC AACGGATCTG
ATTAAAAGCC TCAAGGAGGG TGAGACGGGT CTTGTGGCCT ACGCCGGCGA CGCCTTTACC
ATCAGCCCGC TGACCCGGGA CAAATCAACT CTACTAAACC TGCTGCCAAC CCTGTCGCCG
GAGATCATGC CTGTGCTGGG CTCCAACCTG CCAGCGGCGC TAGATCAGGC TAAGCAGCTG
CTTGTCCAGG GCGGTCACCT CAAGGGCGAG ATCATCTTGC TGGCCGATGG CGTGAATCCG
GACCAAATCG GCGAAGCCAA ATCGATACTG GACGATACTC AGTATCGTCT CTCCATCATC
GCCATGGGGA CAAACCAGGG CGCCGCCATC CGCTTGCCGG ATGGACAACT GATGCGTGAC
CAAAGCGATC AGGTGGTGGT CAGTCAGACG GATCTCAGCC AGCTTAATAG TTTAATTGGC
AACAGCGGCG GCAAGTTGTT TGCCTACCGC GCCGATGGCA AAGATCTTGA GTCACTGACC
CAAAGCTTAA GCCAGGAGAG CGATGCCAAG ACCTCAGATC GCCAAGGGGA AGCCTGGCAA
GATCTCGGCC CCTATCTGGC CCTGCTCCTG CTGCTGCCGG CGCTGCTGAG TTTCAGACAC
GCCTTCGCCG CGCTTGCCTG TTTAGTTATT CTCGCCCCGA GCCCAGAAGC CCAGGCTGCC
AGTTGGCAAC ATCCCTTCAG CACAGACGAT CAGCGGGCGA TGCAGGCCTA TCAAGCGCAA
GACTTTCAAG GCGCGGCAGA GCAATTTACC TCGCCCCAGT GGAAGGCCGC ATCCCTGTAC
AAGAATGGTG ATTATCAAGA GGCGCTCAAG CTTTTCGAGC AGGATGACTC GGCGAGTGGC
CTGTTTAATC AGGGCAACAG CCTGATGCAG CTCAATGATC TCGACAAGGC CATCGAGCGT
TATCAGCAGG CGCTTAAGAA AGACCCTCAG CTTACTCAGG CCGAGCAAAA TCTTGAGTTG
GCCGAGCAGC TAAAGCAGCA ACAGCAAGCT AGCCAAGATC AAGGCCAATC TGATCAGAAA
AAGTCCGAGC AGAATCAATC TGATCAAGAC CAGTCGAATC AGGACTCAAA TAAGCAAGAT
AAGTCCCAAC AAGACGGCGC CGGGCAAAAT CAAGGCCAGC AACAAGGCCA AGGCGATCAG
CAATCGGGCC AGGGCTCGAG AGGCCAGCAG TCTCAAGGCC AGAATGGTCA ACAAGAAGAT
GAGCAAGGCT CTAACCAGCA AGGCTCTGAC AAGCAAGGCT CTGACAAGCA AAGCGCTAGC
CAAGAAAGCC CTGAGCAAGA AACTCCCGAG CAACAAGCCT CTGCCGAGCA GGAAGCCAGC
CAGGATGGTC AGTCGCAAAA CCAGCAGACA GGCGCCGCTA ATGACGCTCA GATGAGCGCC
GATCCGGCCA AAGACGCCAA AAATCAAATG GACGCCAACG CAAATCAATC TGACGCTGGC
CAGCAGATGG GACAAGGCCA ACAGCCGCAA GACGAACAAG AGAGCACTCA AGCCCAGGCC
GCGAATATGA CCCAGGGCAA ACCCGGCGAG GGCGATGAGC AAGGCGAGCC GGTAGCCGCC
GCAACCAACG CCATTGCGCC AGAAGATCTG CCCCCCGAGA TGCAGCGCGC CCTTACCGGG
GTGATAGACG ACCCTCAGGT CTTGCTGCGC AACAAGATGC AACTGGAATA TCAAAAACGC
CGCCGTCAGG GGGCGACCAT AAAGGACAAT CAACAGTGGT AA
 
Protein sequence
MIHFLRPEWL LALIPLALLL WLRKRQRHQA SSWNRYIAPH LAKVLVSGQA SNKKQHLGLI 
AFIWLVSVLA LSGPALTKQQ LPVFEANLGR VIVMDMSLSM YATDLAPNRL TQAKFKATDL
IKSLKEGETG LVAYAGDAFT ISPLTRDKST LLNLLPTLSP EIMPVLGSNL PAALDQAKQL
LVQGGHLKGE IILLADGVNP DQIGEAKSIL DDTQYRLSII AMGTNQGAAI RLPDGQLMRD
QSDQVVVSQT DLSQLNSLIG NSGGKLFAYR ADGKDLESLT QSLSQESDAK TSDRQGEAWQ
DLGPYLALLL LLPALLSFRH AFAALACLVI LAPSPEAQAA SWQHPFSTDD QRAMQAYQAQ
DFQGAAEQFT SPQWKAASLY KNGDYQEALK LFEQDDSASG LFNQGNSLMQ LNDLDKAIER
YQQALKKDPQ LTQAEQNLEL AEQLKQQQQA SQDQGQSDQK KSEQNQSDQD QSNQDSNKQD
KSQQDGAGQN QGQQQGQGDQ QSGQGSRGQQ SQGQNGQQED EQGSNQQGSD KQGSDKQSAS
QESPEQETPE QQASAEQEAS QDGQSQNQQT GAANDAQMSA DPAKDAKNQM DANANQSDAG
QQMGQGQQPQ DEQESTQAQA ANMTQGKPGE GDEQGEPVAA ATNAIAPEDL PPEMQRALTG
VIDDPQVLLR NKMQLEYQKR RRQGATIKDN QQW