| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2420 |
|---|
| Symbol | |
|---|
| ID | 4921750 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 2840092 |
|---|
| End bp | 2842869 |
|---|
| Gene Length | 2778 bp |
|---|
| Protein Length | 925 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640164010 |
|---|
| Product | peptidase M16 domain-containing protein |
|---|
| Protein accession | YP_001094545 |
|---|
| Protein GI | 127513348 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1025] Secreted/periplasmic Zn-dependent peptidases, insulinase-like |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.723869 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGATCA CTAAAAGCCC CAACGATCAT CGCCAGTATC AGTATCTGCA GCTGGACAAT
GGGCTACGTG TATTGCTAGT GGAAGATCTC CAGGCGCAAC AGGCTGCCGC ATCGATGGCG
GTCAACGTCG GCCATTTTGA CGATCCCGCT TCGCGTCCTG GCATGGCGCA TTTTCTCGAA
CATATGCTGT TTCTGGGCAC GGAAAAATAC CCCAAGTCTG GCGAGTACCA TGCCTTCATC
AATCAACACG GCGGCAGCAA CAACGCCTGG ACAGGCACGG AGCAGACCAA CTTCTTCTTC
TCCATCGACG CCGAGGTGTT CGAGGAGTCG TTGGATCGCT TTAGCCAGTT TTTTATCGCG
CCCTGCTTCG ATCTTGAGCT GGTCGATAGA GAGCGCCACG CCATCGAGTC CGAATTTAGC
CTTAAGCTCA AAGATGATAT CCGCCGCACC TATCAGGTAC AGAAGGAAAC GGTTAATCCG
GCTCATCCCT TTTCAAAGTT TTCGGTTGGC AATCTCAAGA CCTTAGACGG CGATGAGAAA
ACACTGAGGC AAGAGCTGCT GGATTTCTAT CAGACCCATT ACAGCGCCAA CCTTATGACC
CTGTGTCTGG TAGCACCCTT ACCACTAGAT GAACTCTTGG CATTGGCCGA GAGCTATTTT
GTGCCGATTG AAAACCGCAA GCTGGCAAAG CAATACCCAA ATGTGGCCAT CTATGAAGCG
GCTCAGCTTG GCCAACAGAT CAACATAGTA CCGCTGAAAG AGCAGCGCCG CGTGGCGATC
ACCTTTCCTC TACCCGCCAT CGACCGCTTC TACAAGCGCA AGCCGCTGAC CTTTATCAGT
CATCTATTGG GCTATGAGGG CAAGGGCAGC CTGCTGAGTC ACCTAAAGGA TCAGGGACTG
GCCATCAATC TCTCGGCCGG TGGCGGGGTC AACGGCTATA ACTTTAAAGA CTATAACATC
AGTATTCAGC TGACCGAGAA AGGCCTGCTA CAGCTCGATG ATGTGATTCA GGCGAGCTTC
GAATACCTGA AACTCATTAA GACCCAGGGC ATGCAGGCCT GGCGCTATCA AGAGCGAGCC
AACCTGCTCA AGCTTGCCTT CAAATATCAG GAACAGATAA AACCACTGGA TCTGGCCAGT
CATCTCAGCA TCAACATGCA CCATTACGAG GTATCTGATC TCATCTATGG TGACTATCGC
ATGGATGGTT TGGATGTAGC TCAGGTCACC GAATTGCTGG ACCTGATGAG CCCGGATAAT
TTGCGTATTC AGCTGATCTC ACCTGATTTA GACACAGAGA AACAGGCCTC CTGGTATCAC
TCACCCTATC AGATGAAGCC CATAGATGCA CAGCGACTCA AGCATTGGCG CGAGCCTGAG
ATTCGAGAGG CACTTAAACT GCCGGAGCCT AACCCCTTTA TTATCGAAGA CTCGATCGCC
AGAGACGTTA AGAGTGACCA TCCGGTGCCT GTCGTCGTCT GTCAGGAAAC CGGCTATCGT
ATTTGGCACA AGAAAGATGA CGAATTTAAC GTGCCTAAGG GGCATATGTA CTTGTCCCTG
GATTCACACC AGGCCGCCGC AACCCCAAAA CACGCGGCGC TGACCCGCCT CTACGTGGAG
ATGTTGCTCG ATTATCTGAC CGAGTTTACG TATCCGGCCG AAGTCGCAGG GCTCAGCTAC
AACATCTACC CTCACCAGGG GGGGATCACT CTGCATCTGA CCGGATTAAC CGGTAAACAA
GAGGCTCTGC TGTCACTGCT GATAAACAAA GCCAGAGAAC GTAACTTTAC CCAGGACAGG
TTTAAGCAGA TAAAGAAACA GATCCTACGC AACTGGTTTA ACCAGAGCCG CGCAAAGCCC
ATCTCTCAGC TATTTACCAG CCTGACGGTG ACGCTGCAGA AACGCAGTTT CGAGCCGCAA
CGTATGGCTG AGGAGCTAGA AGACATTACC CTGGACGACC TTCACAACCA TGTTCGGGCC
TTCTATGAGA AGATCCATCT CGAGGGTCTT GTCTATGGCG ACTGGCTGAC CGAAGAGGCT
CAGGCCTTGG GTAAGCGACT CGACCATATT CTCTCTCTAG TATCTTCACC CAGCGGTGAG
TCCGAACGAG AGCTGATAAA ACTTGAAAAT GTCGGCACCC TGATGCGTGA GGTCAGCGTT
AATCATCAGG ACAGTAGCAT CATAGTCTAC TATCAGTCGG CCCAGGCAAC ACCGCTGAAG
ATGGCGCTGT TTAGCCTGTT AAATCACACT ATGTCTTCGA CTTTCTTCCA CGAGTTGAGA
ACCAAGCGTC AGTTAGGCTA CATGGTGGGC ACAGGTTATC TGCCACTCAA TCGTTACCCA
GGGATGATCT TCTATGTGCA GTCTCCCACC GCAGGTCCTT TAAAACTGCT GGAGGCCATT
GACGAGTTTA TTGCCGACTT TAACTACGCT GTCATGCAGA TCACCAATGA TCAATGGGAA
CTCACCAAGC AAGGACTCAT CAACCAGATC ATGGAACACG ACCCCAACCT TAAGACCCGG
GGACAGAGAT ATTGGTCGAG CATTGGAAAC AAAGACTACG ACTTTAATCA GCGAGAACTG
GTCGCCGAGC AAATTGGTGA GCTCACCCGT TCGGATCTGA TTAAGTTTAT GATGCAGAAA
ATGCGTACCA AACACGGCGA CCGCCTGATC CTCTTCACCA CAGGGGAGCA ACACAGAAAT
CAGGAACAGC TAACCTCAGA CAATATGATC ACAGATCTGA GAAGCTTTAA ACAGCGAGCT
GCTAAGTTTA GCTATTAG
|
|---|
| Protein sequence | MPITKSPNDH RQYQYLQLDN GLRVLLVEDL QAQQAAASMA VNVGHFDDPA SRPGMAHFLE
HMLFLGTEKY PKSGEYHAFI NQHGGSNNAW TGTEQTNFFF SIDAEVFEES LDRFSQFFIA
PCFDLELVDR ERHAIESEFS LKLKDDIRRT YQVQKETVNP AHPFSKFSVG NLKTLDGDEK
TLRQELLDFY QTHYSANLMT LCLVAPLPLD ELLALAESYF VPIENRKLAK QYPNVAIYEA
AQLGQQINIV PLKEQRRVAI TFPLPAIDRF YKRKPLTFIS HLLGYEGKGS LLSHLKDQGL
AINLSAGGGV NGYNFKDYNI SIQLTEKGLL QLDDVIQASF EYLKLIKTQG MQAWRYQERA
NLLKLAFKYQ EQIKPLDLAS HLSINMHHYE VSDLIYGDYR MDGLDVAQVT ELLDLMSPDN
LRIQLISPDL DTEKQASWYH SPYQMKPIDA QRLKHWREPE IREALKLPEP NPFIIEDSIA
RDVKSDHPVP VVVCQETGYR IWHKKDDEFN VPKGHMYLSL DSHQAAATPK HAALTRLYVE
MLLDYLTEFT YPAEVAGLSY NIYPHQGGIT LHLTGLTGKQ EALLSLLINK ARERNFTQDR
FKQIKKQILR NWFNQSRAKP ISQLFTSLTV TLQKRSFEPQ RMAEELEDIT LDDLHNHVRA
FYEKIHLEGL VYGDWLTEEA QALGKRLDHI LSLVSSPSGE SERELIKLEN VGTLMREVSV
NHQDSSIIVY YQSAQATPLK MALFSLLNHT MSSTFFHELR TKRQLGYMVG TGYLPLNRYP
GMIFYVQSPT AGPLKLLEAI DEFIADFNYA VMQITNDQWE LTKQGLINQI MEHDPNLKTR
GQRYWSSIGN KDYDFNQREL VAEQIGELTR SDLIKFMMQK MRTKHGDRLI LFTTGEQHRN
QEQLTSDNMI TDLRSFKQRA AKFSY
|
|---|
| |