| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2409 |
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| Symbol | |
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| ID | 4921739 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2828652 |
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| End bp | 2829389 |
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| Gene Length | 738 bp |
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| Protein Length | 245 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640163999 |
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| Product | short chain dehydrogenase |
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| Protein accession | YP_001094534 |
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| Protein GI | 127513337 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00187204 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTTGGAAT ATCAGGCAGC AAAAGATTTA CTTAAAGATA AAACGATACT GGTCACAGGC
GCCGGAGATG GTATTGGTCG CGCCGCTGCT CTGGCCTACG CTGAACATGG TGCCACGGTG
ATCTTGCTGG GCAAGACAGT CAAGAAACTG GAAGCCGTCT ATGACGAGAT AGAACAGGCC
GGCTACCCTA CTCCCGCTAT CGTGCCACTC GATCTCAAAG GCGCCACAGA GCAAAACTAT
CAGGACATGG CCGAAACCAT AGAGCAGCAG TTTGGTCACC TCGACGGCCT GCTGCACAAC
GCCAGCCTGC TAGGCGTGCT AGGCCCGTTC GAACATATCT CGATGGATTC GGTCAAGGAA
GTACTACAGG TTAACCTGGT CGCCGAGATC ATGATGACCA AGGCGCTGCT TCCCGTGATG
AAGAAAGCTC CTGCAGCCTC AATCCTGTTC ACCTCCAGCA GTGTTGGCCG TCAGGGACGC
GCCTTCTGGG GCGAGTATGC CATCTCAAAA TTTGCCACCG AAGGCATGAT GCAGTCTCTG
GCCCACGAAT ATGAAGACAG CAACCTGAGA GTCAACAGCA TCAATCCTGG CGCCACCCGC
ACCAAGATGC GCGCCAATGC CTACCCTGCC GAGAACCCAC AGGATCTCAA GGCGCCAGAA
GAGATCATGG CGACCTATCT CTACCTCATG GGTGACGATG CTAAGGGCGT CACGGGCCAG
CAGTTTAACG CCCAGTAG
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| Protein sequence | MLEYQAAKDL LKDKTILVTG AGDGIGRAAA LAYAEHGATV ILLGKTVKKL EAVYDEIEQA
GYPTPAIVPL DLKGATEQNY QDMAETIEQQ FGHLDGLLHN ASLLGVLGPF EHISMDSVKE
VLQVNLVAEI MMTKALLPVM KKAPAASILF TSSSVGRQGR AFWGEYAISK FATEGMMQSL
AHEYEDSNLR VNSINPGATR TKMRANAYPA ENPQDLKAPE EIMATYLYLM GDDAKGVTGQ
QFNAQ
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