| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2406 |
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| Symbol | |
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| ID | 4921796 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2823593 |
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| End bp | 2824606 |
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| Gene Length | 1014 bp |
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| Protein Length | 337 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640163996 |
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| Product | AraC family transcriptional regulator |
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| Protein accession | YP_001094531 |
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| Protein GI | 127513334 |
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| COG category | [K] Transcription |
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| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0741804 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGAGTA ATACCCGCTA TCAGGCGACA TTAAAAGTTG GCGATCAATC TTATCCCGCC
TATGAACTGA GAAGCCTGGT TCATTTCATG GCCGAGCGTT ACGGCGAGCA TCATGCCGAG
CAGCTATGTC AGGAGATAGG CCTGGGGCTT AACGAGCTGG CCAAGTTAAA CTTTGTCTAT
GTCTGGCAGG TGGACTATGC CATGGCGTTT CTGGGGAACT TAGCCGATGA CCCTCAGATA
GGCGCGCGGC TCGGCGAGAC CTACAAGGTG GAAGAGCTGG CGCTTATCTG GCCCTATCTG
GCCAAGTGTC AGACCTTAGG TGAATGCCTT GAGTTTGTTA TCGCCCATCC CGAGCTGGTG
GGCAGTGTCT CGGATACCCT AGTGAGCCAT GGCGAGCGAA GCCTCTATTT TCGCTGGCTC
AATACGGCGA AGATCTCGGC GCCCTATTTC AGCCTGCAGT TTCAAAACAG CGTCTGCTCT
ATGTTAGCCC TGGCGCGTCA GCTCACGGGT CAGATGGTGA CACTCGAGCG GGTGCAGCTG
GCCACCCCGG CCCATGACAG TGAGTTCCTG GCGGCCTTTT GCCAGGCCGA TGTTGGTTTC
GACGGCGAGT TCTTCGAGTG GGCCATCTCC CATGAAATGC TTTCGCTGCC TGTTGTGTAT
GACTTCTCTC TGCTACAACT TGATAAGCAG GCCCTGCATG ACACCTCCTT GATCGAGAAG
GTGCTGGCCA TACTAAACCA GGATTTTCCC AATAATCCTA AGCTGGAGTC GATGGCGCTG
AGACTCAACA TGAGCGATCG CACCCTGAGG CGACACCTGG CGAGTGCCGG CACCAGCTAT
CAGAAGCTGG TGGATCAGGT GCGCTGCCAG ACGGCTATTG GTCTCATCGT TCAGGGTGAC
AAGAGCATAG TGGATATCGC TGACATCATG GGGTTCGGCG ATGTGAGCCA TTTCCGTCAG
AGCTTCAAAC ACTGGCTTGG CTTGCCGCCA GGCCAGTTTA TTCGCAAGAT CTAG
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| Protein sequence | MTSNTRYQAT LKVGDQSYPA YELRSLVHFM AERYGEHHAE QLCQEIGLGL NELAKLNFVY
VWQVDYAMAF LGNLADDPQI GARLGETYKV EELALIWPYL AKCQTLGECL EFVIAHPELV
GSVSDTLVSH GERSLYFRWL NTAKISAPYF SLQFQNSVCS MLALARQLTG QMVTLERVQL
ATPAHDSEFL AAFCQADVGF DGEFFEWAIS HEMLSLPVVY DFSLLQLDKQ ALHDTSLIEK
VLAILNQDFP NNPKLESMAL RLNMSDRTLR RHLASAGTSY QKLVDQVRCQ TAIGLIVQGD
KSIVDIADIM GFGDVSHFRQ SFKHWLGLPP GQFIRKI
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