Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2404 |
Symbol | |
ID | 4921794 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 2819657 |
End bp | 2822308 |
Gene Length | 2652 bp |
Protein Length | 883 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640163994 |
Product | hypothetical protein |
Protein accession | YP_001094529 |
Protein GI | 127513332 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.647298 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTCAACA AGATGCCTTC GTGGCTGCTC CCAAGTCTAG TGGCCAGTGC AGTGGCCCTC TCCATCACCG CCTGTTCCTC AGATGATGAA GATACCCCTA ACGTCGAGAC ACCACCTGTT ACCACCACAC CAACGGATCC CGGCCCAAGC TTTCCGGTCG GTGCCATCAT CATCGAAGAT GGCGAGAATC TGACCACCCG CATTCAGGAA GCCCTGATCA ACGCCCAGAG CAATGATGTG ATCGTGCTGC CTAAGGGACA CTTTAAGATA GAGTCGACCC TGCTATTTGA CGGCGACGTG GACGGTGACG GTGCCTATGC CAAGAACATC ACCATCATGG GCTACGGCAT GGAAGAGACC GTGCTGGACT TCTCCGAATC GATCACCGGC GATGGTATCT TCGTGCAGAA CGCCGTTAAC ATCACTATCC AGGATCTCTC GGTCAATGAG GCCAAGAACA ACGGCATCAA GCTGAAAAAC ACCAACGGCA TCATCTTAAG ACGCCTGGCC ACCGTATGGG AAGGTGCACT GGATGAAGAT AACGGCGCCT ACGGCCTCTA TCCGGTGGAG TGTGAAAACA TCCTCATCGA AGACACCTAT GTACGCGGCA GCGCCGATGC CGGTATCTAT GTGGGTCAGT CTGAGTACAT AGTGGTTCGC CGTAACATCG CCAAAGAAAA CGTCGCCGGT ATCGAGATTG AAAACTCTAA ATACGCCGAC GTCTACGACA ACGAAGCCAT GGGCAACACG GGCGGCATCC TGGTATTCGA TCTGCCGATC AACAACCACA GATATGGCTC CAGTGTGCGT ATCTTCAACA ACAAGGTGTA TAACAACAAT ACCCCTAACT TCGCCAACGC CTCCTCTAAC CCTGCCGGGG TACATATCGT GCCGCCGGGC ACTGGGGTGA TCATCCTCTC CACCAACGAT GTGGAGATCT TCAACAACGA GATCACCGGC CACGACACAT TAGGGGTGAC CGTCTCCAGC TTCTTCATCG CCGAACCGGA TATGACCAGC TTTGTAGGCA ACTATGGCCA GCCGGGCCAG CCCATTGAAG ATGGCTGGCG CCCGACACCA CGCAACATCT ATCTGCATGA CAACGTCATC ACAGACTATG GCAAGAAGCC TAATGGCTAT CTGATTGAAG ATATCATCAA GGCCTACCTG CTGAGCCACG GCGCCTTCCC TGGGATCCTC TACGATGGCC TGGGCGAGAT GCTCTCCAAC AACGGCACCG CCGCCTATCT GGGGCTTAAG GAGTTGCCTT TTGCCGATGA TGGCAGCGAC AACATCTGTG CCCGCGATAA CGGCGATGTC TCCTTCGGTC GTCTCTATGC CAACAACAAC ACAGATATCA GCATCGCCGA CGTCCTCTAT GAGAAGACCC AGGATAAGAT CATGAACTGT GCCCAGGTCA GTTTGCCTGT GCACACTGTC ACCTTTGGCG ATCAGATCTT CGGTTGCGGC GTGGATGACG ATGTCGAGGG CTGTGACGGC GGCAACCTGG TCGGTGGTGG TGGCACCATA GGCGAAGGTG AAGGTGGTCT GGTGGGCGAT GGTGACCTTA GCCTGTGTAG CACCACCCCC CCAGGCGTAA ATTGGGATGC GCTGCTGGGC GCCAACTGCC CTAACCTCTC AGACTATCAG CTGTTTGCCG ATACCAAGGA TCCGAGCACT GGGGCGAACT CAGGCGGCAT CCCTTACGAT CTCAACACTC AGCTGTTTAC CGACTATGCC AGCAAGTATC GCTTCGTCTT CGTGCCAGAG GACAAGGTGG CCAACTACTC GACCAACGAG AGCATGGACT TCCCGGTCGG TACCGTGATC ACTAAGACCT TCGCCCTGCC AAGCGACACC AGCAAGCGCG GCGTGGCCAA CGAGACACTG GTCGAGACCC GACTGCTTAT TAAACGCGCC ACAGGTTGGT CGGCCCTGCC CTATGTGTTT AACGCAGAGC AGACAGATGC GGTGCTGGCC AAGGCCGGTG CCATCCAGGC CAAGCAGGTG GTTCACAACG GTAAGACGCT GGACTTCGAC TATGTGGTCC CCAGCATGAA CCAGTGTAAG CAGTGCCACC AGTTCAAGAG TGACGATGCA AGTAACGCGG TATTCGTGCC AATCGGCCCT AAGGCGCGTC ATCTGAACAA GGACTATGCC TATAGCGACG GCACCATGAA TCAGCTGATG AAGTGGCAGG CCGCCGGTAT CTTGCAGGGC GTGCCAGACA AGGCAAGCAT CCCTACAGTA CCCGCCTTCC ACGATGGCGA CGAGGCTAAG GTGGCTGCCA TGACAGATGC CGAGTTGATG CAAACCGCCA AGGGCTACCT GGATATCAAC TGCGCCCACT GTCACCGCCC AGAAGGCAAC GCCTCTAACA CTGGCCTGAA GCTGGAGTAC TGGCGCACCT ACGAGGAGGA TAGCGGCTAT TCTCACGGTA CCTGTAAGTC GCCAATCGCC TATGGCGGTG GCTCGCTGAG CTACGATGTG GTGCCTGGCT CGAGCGAGAC CTCTATCCTG CACTTCCGCA TGGATAGCAC GACACCTGGC GATCGCATGC CAGAGATAGG TCGCAGCCTG TCCCACACCG AAGGCACGGC CTTGATTGCC GAGTGGATCA AGCGACTACC GCTGGCCACC TGCTCTCAAT AA
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Protein sequence | MFNKMPSWLL PSLVASAVAL SITACSSDDE DTPNVETPPV TTTPTDPGPS FPVGAIIIED GENLTTRIQE ALINAQSNDV IVLPKGHFKI ESTLLFDGDV DGDGAYAKNI TIMGYGMEET VLDFSESITG DGIFVQNAVN ITIQDLSVNE AKNNGIKLKN TNGIILRRLA TVWEGALDED NGAYGLYPVE CENILIEDTY VRGSADAGIY VGQSEYIVVR RNIAKENVAG IEIENSKYAD VYDNEAMGNT GGILVFDLPI NNHRYGSSVR IFNNKVYNNN TPNFANASSN PAGVHIVPPG TGVIILSTND VEIFNNEITG HDTLGVTVSS FFIAEPDMTS FVGNYGQPGQ PIEDGWRPTP RNIYLHDNVI TDYGKKPNGY LIEDIIKAYL LSHGAFPGIL YDGLGEMLSN NGTAAYLGLK ELPFADDGSD NICARDNGDV SFGRLYANNN TDISIADVLY EKTQDKIMNC AQVSLPVHTV TFGDQIFGCG VDDDVEGCDG GNLVGGGGTI GEGEGGLVGD GDLSLCSTTP PGVNWDALLG ANCPNLSDYQ LFADTKDPST GANSGGIPYD LNTQLFTDYA SKYRFVFVPE DKVANYSTNE SMDFPVGTVI TKTFALPSDT SKRGVANETL VETRLLIKRA TGWSALPYVF NAEQTDAVLA KAGAIQAKQV VHNGKTLDFD YVVPSMNQCK QCHQFKSDDA SNAVFVPIGP KARHLNKDYA YSDGTMNQLM KWQAAGILQG VPDKASIPTV PAFHDGDEAK VAAMTDAELM QTAKGYLDIN CAHCHRPEGN ASNTGLKLEY WRTYEEDSGY SHGTCKSPIA YGGGSLSYDV VPGSSETSIL HFRMDSTTPG DRMPEIGRSL SHTEGTALIA EWIKRLPLAT CSQ
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