| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2388 |
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| Symbol | |
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| ID | 4921452 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2797912 |
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| End bp | 2799438 |
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| Gene Length | 1527 bp |
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| Protein Length | 508 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640163978 |
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| Product | formate/nitrite transporter |
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| Protein accession | YP_001094513 |
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| Protein GI | 127513316 |
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| COG category | [K] Transcription
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG2116] Formate/nitrite family of transporters
[COG2524] Predicted transcriptional regulator, contains C-terminal CBS domains |
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| TIGRFAM ID | [TIGR00790] formate/nitrite transporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0694768 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGATAC CTAATCTAGT GCCACTTGCA GCCAGGCGGG TCGAGCCAGC GCCTTCGAGC
GAGCCTAGTC TGTGTCAACG CGTCGCGACT TATGGTCAGG AGAAGGTAAC TAAGCAGGCG
ATGCAGTCTA TCGGCCAGGC GATGTTTGCC GGCGCCTTTA TCGCGCTCGC CTTCGTGTTT
TATCTCACCG TTACCACGGG GGCATCTGGC GATTGGGGCA TGGTACGACT CGTTGGCGGC
CTGGCCTTTA GCTTGGGGCT GATGTTGGTG GTGATCTGTG GTGGTGAGCT GTTTACCAGT
AGCGTACTGA GCAGCGTCGC CTGGGCGCAG AAACGTGTCA GCACGCGGGA GCTGCTGGCC
TGTTGGGGAC GCGTCTATCT GGGTAACTTT TGCGGCGCCA TGATCATGCT GGCTTTGATC
CTCAGTGCCA AGATGTATCT GTTAGACGGT GGACTCTGGG GACTCAACGC CTTGAAGGTC
GCCCAACATA AGCTGCACCA CTCCTGGGGC CAGGCGTTCG CACTGGGCAT CTTATGTAAC
ATGCTGGTTT GTTTAGGGGT TTGGATGACC TTCGCCAGTA AGGAGGCGCT GACTAAGGCC
ATCTTGTTGA TGCTACCCGT GGCGATGTTT GTCAGCAGCG GCTTCGAGCA CAGCATAGCC
AATCTCTTCA TGGTGCCGCT GGGGATCGCC ATTAAGCAGT TGGCCATCTG GGACTGGTAT
CAGATCCCCG GATTTACCGC CGAGCAATTT AGTGATCTGA CGCTGCTTCA TTTTCTGACC
AATAACCTTA TCCCTGTGAC CGCGGGCAAT ATCGTCGGCG GTGGCCTAGT GGTGGGGCTG
GGTTACTGGT GGATAGATTC AAGTAAGGCA CATGTTGGCC CACTCGCTCA GGTGACATCT
ATGACGGTGC ATCTCGAACC TGTGTTAAGC CGCAGTGATC AGAGTAACAG ACAGGACAAC
GGCAGCGAAC TCGCTGCAAA TTCAATCTCA ATATTATCTA GTAAAGCTTG CAGGGGAGAG
ACCCAAATGC CTAAATCGAT TCAAAAATTA AATGTCAGCG TGCTGATGGA GCAGACACCT
TTTACCCTAG CCCCCGAGCT GTCTGTATAT GAGGGGCTTA AGCAGCTCAA CGAGAAGCAG
CTCCGCGGCG CGCCCGTGGT TGATGCTAAG CAACGCCTGC TGGGGTTTGT CTCTCAGCAA
GATCTGCTGC GTAGCCTATG GTCAGAAGAG TTTGTTCGTG GCATTAGCTA CAAGGTGGCC
GATCTGATGC AGACCAGGGT GCTGACGGTA ACCCCTGATG ATGCGGTGGC CGATCTTATT
GAGGTGATGG TGGTAGACCG TGACAAGCTG TTTCCCGTGA GTGACATGGG GGTGCTGACT
GGCCATACCT ATGCCAGTTA CGAGGAGCGA CTGCGCCATG CCAGCGCCAG TAAGCCCAGC
TGTTTTCCTG TGGTCAGTGA AGGCAAGTTA GTTGGGGTGA TTAACCGAGA GTCCATCGTA
GCCAAGGTAT GCGCCATCTA CGAATAG
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| Protein sequence | MTIPNLVPLA ARRVEPAPSS EPSLCQRVAT YGQEKVTKQA MQSIGQAMFA GAFIALAFVF
YLTVTTGASG DWGMVRLVGG LAFSLGLMLV VICGGELFTS SVLSSVAWAQ KRVSTRELLA
CWGRVYLGNF CGAMIMLALI LSAKMYLLDG GLWGLNALKV AQHKLHHSWG QAFALGILCN
MLVCLGVWMT FASKEALTKA ILLMLPVAMF VSSGFEHSIA NLFMVPLGIA IKQLAIWDWY
QIPGFTAEQF SDLTLLHFLT NNLIPVTAGN IVGGGLVVGL GYWWIDSSKA HVGPLAQVTS
MTVHLEPVLS RSDQSNRQDN GSELAANSIS ILSSKACRGE TQMPKSIQKL NVSVLMEQTP
FTLAPELSVY EGLKQLNEKQ LRGAPVVDAK QRLLGFVSQQ DLLRSLWSEE FVRGISYKVA
DLMQTRVLTV TPDDAVADLI EVMVVDRDKL FPVSDMGVLT GHTYASYEER LRHASASKPS
CFPVVSEGKL VGVINRESIV AKVCAIYE
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