| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2387 |
|---|
| Symbol | |
|---|
| ID | 4921451 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 2796863 |
|---|
| End bp | 2797777 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640163977 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001094512 |
|---|
| Protein GI | 127513315 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0274334 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTACT CACTAAAACA AATCATGGTG TTCGATGCCG TAGCCAGCCT GGAAAGTGTG
AGTGCCGCGG CGCGAAAACT GTCGATGACT CAGTCTGCAG TCAGCATGTC CCTTGGCCAG
TTGGAAAACC TGCTCGGCCG CCCGCTGTTT ATCAGACAGG GCAATCGCCT CACCCTCAGC
CACTGGGGAA ACTGGTTACG CCCAAGGGCA AGACGCCTGC TGCAAGATGC ACAACAGATC
GAACTAGGCC TTCACGAACA ACACCTTATA AGTGGTCGTT TCCGTTTATG CTCGAGTCAG
ACGGCCGCCG AACATCTGCT GCCTGAGCTC ATCAGTAAAA TCGATACCGA TTTTCCTGAA
CTTAGGATCG AGCTCACAGT GGAGAATACC GAGAACGTGG TCGAGGGCTT ACTTAATTAC
GAATATGACT TTGGCATCAT AGAAGGCCGC AACGACGACA GCCGTCTCTA TCAGGAGCAA
TGGTTAGACG ATCATCTGGT GGTAGTCGCC TCGCCTCACC ACCCCTACGC CAAGCAAACC
AACATCAGCC TGGCGCAGCT TGAACAGGCA AGATGGGTGC TGCGCGAACA AGGCGCCGGG
ACCCGCCGCA TCTTCGAGGG AGCCATCCAC GGCGTCATCG AAAAGCTTCA CGTATGGAAA
GAGTATGAGC ATGTCTCCCT GCTCAAGGCC TTGGTGAAAA ATGGCCCCTA TCTGAGTAGC
CTGCCTTTCC TGGATGTGGA GAAAGAGGTC GCCGCCGGCG AGCTGGTTAT CTTACCAACG
CCGCAACTCA ATATGCAGAG GCACCTCTCT TTCGTGTGGC GCTGCGATTC AGGCGAGAAT
CCGCTACGTG ACTGCGTGAT CACCGAGGCC AGACGCCTGA GCAAACATCG CCAGCACGCC
AAAGGCAATA AATAG
|
|---|
| Protein sequence | MKYSLKQIMV FDAVASLESV SAAARKLSMT QSAVSMSLGQ LENLLGRPLF IRQGNRLTLS
HWGNWLRPRA RRLLQDAQQI ELGLHEQHLI SGRFRLCSSQ TAAEHLLPEL ISKIDTDFPE
LRIELTVENT ENVVEGLLNY EYDFGIIEGR NDDSRLYQEQ WLDDHLVVVA SPHHPYAKQT
NISLAQLEQA RWVLREQGAG TRRIFEGAIH GVIEKLHVWK EYEHVSLLKA LVKNGPYLSS
LPFLDVEKEV AAGELVILPT PQLNMQRHLS FVWRCDSGEN PLRDCVITEA RRLSKHRQHA
KGNK
|
|---|
| |