Gene Shew_2369 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2369 
Symbol 
ID4921896 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp2769980 
End bp2771827 
Gene Length1848 bp 
Protein Length615 aa 
Translation table11 
GC content58% 
IMG OID640163959 
Productcyclic nucleotide-binding protein 
Protein accessionYP_001094494 
Protein GI127513297 
COG category[T] Signal transduction mechanisms 
COG ID[COG2905] Predicted signal-transduction protein containing cAMP-binding and CBS domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00413273 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGACGCGA GCGAACTGCA ACCTATTACC CAATTTCTTG GCCAGCTGAC GCCCTTTGAC 
AGCCTATCTG AGCAGACCCT GGAGCGCTGC TGCCGCGCCC TCACCGTCGG TTATTACAGC
CGCTCCTCCG TCTATGTACC GCTGGATGAG GAGCACCCTC AGCTCTATAT CGTCCGCAGC
GGCGCCTTCG AGGTGCGCGG CGAAGATGGC GACCTGATCG ACAGGCTTGG TGATGGCGAT
TTCTTCGGCT TTCCCTCGCT GCTCTCCGGC GAGAAGGTGA GCAACAGAGT ACAGATCCTC
GAAGATGGTT TGGTATATCA CTTAGACCCA GAAACGTTTA ACCAGCTCAG AAGCGAGAGC
CGCGAGTTCG ATCGCTTCTT TAACCGCGCC TTTGCCAAGC GGCTGCGCCA TCAGGGGCGC
TTCAAGGCCA AGGAGCTTGG TTCAACCAAC AGGGTCAGCA GCCTGATGTC CAAGCAACCC
CTGTGTCTGG ATATCAATGC CAGCGTCAGC GACGCCGCCC GTCTGATGCG GGATAACAGG
GTCTCATCGG TACTTATCAT AGATAACCAA AAGCTTGCGG GGATCCTTAC CGACAGGGAT
CTGCGTAACC GCGTGCTGGC CGAGTCCCTC GACGGCAGCC TACCTGTGCA CCAGGCGATG
ACGGTAACCC CGACCACCCT GAGCGCCAAT GCCCTGGTGT TCGAGGCCAT GTTGTTGATG
AGCCAACACA ACATTCATCA TCTGCCTATC ATGGACGAGG GGCACCCCAT AGGGGTGATC
ACCAGCACAG ATATTTTGCG GGGGCAGAGC TCGCAGCCCT TGCTGCTCAT TGGCGAGATA
GAGCGTCAGC ATGATCTCGA GAGCCTGATC CATGTCTCTA AACAGATCCC GCTGTTGCTG
CAAAACCTCA TCAGCGCCGA TGCCAGGGCC GAGGAGATAG GCAGGGTGCT GACCTCGGTA
ACCGATGCCT TGACCCGGCG GCTGATCGTG CTCAATCAGC AGATCCTCGG TAAAGCGCCC
ATGCCATTTT GCTGGCTGGC GTTTGGCTCT CAGGGGCGCC AGGATCAGGC GGCCTGTTCG
GATCAGGATA ATGGCCTCTT GCTGGCACAT GAGATGGACG AGCATGCTCA GGGGTATTTC
GAGGCCCTGA CCAAGGCGGT CTGCGCCGGA CTGGATCGCT GCGGCTATGT CTATTGCCCT
GGGGATATCA TGGCGCAGAA CCCCAAATGG CGAATGACAC TAGCCCAGTG GCAACAGAAG
TTTGCCAACT GGGTCGAGCA CCCCGAGCCT AAAGCCTTGA TGCATGCCAG CATCTTCTTC
GATATGCGCT GTGTCTATGG GCCGTCGAGC CTGTTTGAGG GGCTGCAGTC TCAGGTGCTG
GAATCCACCA AGGATAACGA TATCTTCCTA GCGGGCATGG CGGGCAACGC CCTACAGGTG
TCACCGCCCC TAGGCTTCTT CAAGAAGTTT GTGCTGGAGC GTGACGGCCA GGAGGTGAAG
GGGATCGATC TTAAGCACAA GGGCAGTGCA CTCATCAACG ACATCGCCAG AGTCTACGCC
CTGTCGGCGG GCATTAGCGA GGTCAACACC GCCAAGCGCA TTCGCCTGCT GATGGAGCAG
AACATCATCA ATCGCAAAGA TGCCCTGAAT CTCGCCGATG CCCACGAGTT TATCGCTCAC
ATGCGCCTGT CGAATCAGGG CTATCAGTAT ACTCACAACC AGCCCCTCAC CAACTATCTG
ATGCCCCAGC AGCTCTCCTC TCTGGTACGT CATCAGCTGC GAGACGCCTT CAAGGTGGTG
CATGACGCGC AGGCGGGCCT AAAACTTAAA TTTACCCGGA GCTTCTAG
 
Protein sequence
MDASELQPIT QFLGQLTPFD SLSEQTLERC CRALTVGYYS RSSVYVPLDE EHPQLYIVRS 
GAFEVRGEDG DLIDRLGDGD FFGFPSLLSG EKVSNRVQIL EDGLVYHLDP ETFNQLRSES
REFDRFFNRA FAKRLRHQGR FKAKELGSTN RVSSLMSKQP LCLDINASVS DAARLMRDNR
VSSVLIIDNQ KLAGILTDRD LRNRVLAESL DGSLPVHQAM TVTPTTLSAN ALVFEAMLLM
SQHNIHHLPI MDEGHPIGVI TSTDILRGQS SQPLLLIGEI ERQHDLESLI HVSKQIPLLL
QNLISADARA EEIGRVLTSV TDALTRRLIV LNQQILGKAP MPFCWLAFGS QGRQDQAACS
DQDNGLLLAH EMDEHAQGYF EALTKAVCAG LDRCGYVYCP GDIMAQNPKW RMTLAQWQQK
FANWVEHPEP KALMHASIFF DMRCVYGPSS LFEGLQSQVL ESTKDNDIFL AGMAGNALQV
SPPLGFFKKF VLERDGQEVK GIDLKHKGSA LINDIARVYA LSAGISEVNT AKRIRLLMEQ
NIINRKDALN LADAHEFIAH MRLSNQGYQY THNQPLTNYL MPQQLSSLVR HQLRDAFKVV
HDAQAGLKLK FTRSF