| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2362 |
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| Symbol | |
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| ID | 4921734 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2762994 |
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| End bp | 2763908 |
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| Gene Length | 915 bp |
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| Protein Length | 304 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640163952 |
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| Product | dihydrodipicolinate synthase |
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| Protein accession | YP_001094487 |
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| Protein GI | 127513290 |
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| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
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| TIGRFAM ID | [TIGR00674] dihydrodipicolinate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000117821 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.484255 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAAGTAA ACTGGCAAGG TGTATTCCCA GCAATTTCTA CCCAATTTAA TGACGATGGT
TCGATCAACT ATGAGTCGAA CGCGAGAATG CTGGAAGACC TCATTCGTGA TGGTATCGAT
GGGGTGATCG CCCTGGGTAC CATAGGCGAG AACGCCTCCC TTTCTCCGGA AGAAAAACGT
GAATTCATCA AGCACACGGT CGAGACGGTC AATGGCCGTA TCCTGGTGCT CTCTGGCTGC
ACCGAAAACA CGGCACAGCA GGCGGCGAAA TACGCCCAGG ATGTCGAGGC GCTCGGTGTC
GATGGCCTGA TGCTACTGCC CGCCATGGTC TACCGCGGCA CTGACCGCGA GGTGATCGCC
CACTACCAAC ACGTAGCGCG CTCGACCAAA CTGCCAATCA TGATCTACAA CAACCCTGTG
GGTTATGGCG TCGACATCAA CCTGGAGATG ACCGCCGTTC TGGCCGAAGA GCCAAACATA
GTGGCCATCA AGGAATCGAC CACAGATACT CGCCGCCTCA CCGAGTTGCA GAGCCGCTTT
GGCGATCGTT TCAACATCCT CTGCGGTGTC GATGATATTG CGCTGGAGAG CATTTTGCTG
GGTGCCACAG GTTGGATCTC TGGCCTAACC AATGTCTTCC CACGAGAATC TGTTACTCTG
TTTAAACTGG CCCGTGCCGG CCGTATTGAA GAAGCCCGTG AGATCTACCG CTGGTTCATG
CCGCTGCTGC GCCTGGACAC CATTCCGACC CTGGTACAGT GCATCAAGTT TGCCGAGCAG
ATCGTCGGCC GCGGCAGCGA AAATGTACGC CTGCCTCGCA TGACCTTGAT CGGTGACGAG
CGTGCCTATG TAGAAAAGGT GATGGCCGAA GCCTTGGCTA CCCGCCTGGA TCTCGACAAG
TACAACCTCA ACTAA
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| Protein sequence | MKVNWQGVFP AISTQFNDDG SINYESNARM LEDLIRDGID GVIALGTIGE NASLSPEEKR
EFIKHTVETV NGRILVLSGC TENTAQQAAK YAQDVEALGV DGLMLLPAMV YRGTDREVIA
HYQHVARSTK LPIMIYNNPV GYGVDINLEM TAVLAEEPNI VAIKESTTDT RRLTELQSRF
GDRFNILCGV DDIALESILL GATGWISGLT NVFPRESVTL FKLARAGRIE EAREIYRWFM
PLLRLDTIPT LVQCIKFAEQ IVGRGSENVR LPRMTLIGDE RAYVEKVMAE ALATRLDLDK
YNLN
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