| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2342 |
|---|
| Symbol | |
|---|
| ID | 4922069 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 2735907 |
|---|
| End bp | 2737541 |
|---|
| Gene Length | 1635 bp |
|---|
| Protein Length | 544 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640163927 |
|---|
| Product | integral membrane sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001094467 |
|---|
| Protein GI | 127513270 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGATTA AAGGTTATCT GTTTGTGCTA TTTGGCGCGC TTATCCTGAT ATTGGGAGGC
AGCCAGCTGC TGGTGTCCCA TTTCTATAAG GCGCAGTTGC AGAGCGAGCT CAGCGAGCGC
TCACGGGATC TGTCGCAAAA TCTGGTGAAA GTGCTGATCG ACAACGTCGG CACAGAGCAA
GAGTTTGTGG TGCAGTTTGA TGAGCAGGCC TTGCAGGAGT CGCTACAAGA TGCCGAGGCG
CTCAGGCAGG AGTTTGAGCA GGATATTGAA TCTGTCTCCC AGGCGATTGC CCAGCTTAGC
GAAGAGGTGG TGCGCATGGA GATGGAGACG GACAACGCCT CCGCCGAGCA AAAAGCCTTC
TTTCGCGCCA AGCTAGCGGC CAAGCAGCAG GAGCTTAGGG ATCATCTCAA CGCCATGATG
TCCTACGAGA AGGAGCTTAA GCAGCGTCAG AGAGCCAGTA TTGCAGAGGC CAAGCGCGAG
GCCGCCGATG AGTATCGCAG GCGCCTGCAT GACGCCGTGA GCCATATTGA GATAGACACC
AACAGCTGGC TCGACAAGGG GAACGTGGCC ATTATAGACG CGCCTATCTC GCCCACCACG
CCGGAGAAGG GTAAGGTTGC GGTGGAATTT GCCCATGATA TCAACTTGCC TAATCAGGAG
ACCAACGAGC AATTGGAGCG TTTCAGCGAG TCCATGATAG GGGCGATTCT GATGAGCTCA
CTGGCTGGCC TCTTATTGGT CTATATGCTC AGCCATGTGA TCAGCGCGCC GCTTTCGGCC
CTGGCGAAGG GCCATAAGAA GTTGGGACAG GGGGAGCTTG GTTATCAGGT GGATGAGCGT
GGGGTCAAAG AGTTAAAGAG TATCCTCAAC GGCTTTAATA AGATGAGCAG TCAGCTCGCC
TCCCTAAGCG AGCAGAAGAA GCAGATGGCG CAGCAGAAAC AGCTTGCCGA ATTGGGTGAA
GTGACTCGTG GGATCGCCCA TAGCCTGCGT AATCCGCTGC ACACCCTGGG GCTCTTGTCT
GAGGCGGTCG CTCAGTCAGA ATCGATAGAG GATGCAAACA AGCTGCTTAG CCAGATGCAG
CAGAAGATCG CCATGATGGA TAAGAGCATT CAATCTCTGC TGACGCTGTC GAGCACTCAG
GTGAATCGCC AGTCTTGGGT GCCATTGGCA GCCACAGTGC AGGATATCTT ACTGGAACTG
TCGATCAACG GCAGCAAGCC CAGCATCGCC TTTCACTGTG AGGATCAAGG GATCCAGGTG
CAGGGCGCCG AGTCGGAGAT CCGTAGCATC TTGCACGCCG TGGTGATCAA TGCGGTGGAG
GCCACCCCGG ACACAGGCCG TATCGACCTG ACCCTGGCGG AGGATGATGA GAGTTATACC
TTAGTGGTGG CCGATACCGG CAAAGGGATC AGCCCTGAGG TGCGTGATAA GCTGGCCCAG
CCCCATGTGA CCACTAAGGC GGAAGGTACT GGAATGGGGA TCTATATCGC CGAGCGTTTG
ATTCAAGGGC ACTACGGTGG GCGCATCACC TTCGATGATA ATCCCGGCGG CGGCACTCTG
GTGACTCTTT ATTTCGCCAA GCCCGATAGT AATAAAACAC AGCAAGAAGA TAAGCCCCAG
ACAGAGGAAG TATGA
|
|---|
| Protein sequence | MSIKGYLFVL FGALILILGG SQLLVSHFYK AQLQSELSER SRDLSQNLVK VLIDNVGTEQ
EFVVQFDEQA LQESLQDAEA LRQEFEQDIE SVSQAIAQLS EEVVRMEMET DNASAEQKAF
FRAKLAAKQQ ELRDHLNAMM SYEKELKQRQ RASIAEAKRE AADEYRRRLH DAVSHIEIDT
NSWLDKGNVA IIDAPISPTT PEKGKVAVEF AHDINLPNQE TNEQLERFSE SMIGAILMSS
LAGLLLVYML SHVISAPLSA LAKGHKKLGQ GELGYQVDER GVKELKSILN GFNKMSSQLA
SLSEQKKQMA QQKQLAELGE VTRGIAHSLR NPLHTLGLLS EAVAQSESIE DANKLLSQMQ
QKIAMMDKSI QSLLTLSSTQ VNRQSWVPLA ATVQDILLEL SINGSKPSIA FHCEDQGIQV
QGAESEIRSI LHAVVINAVE ATPDTGRIDL TLAEDDESYT LVVADTGKGI SPEVRDKLAQ
PHVTTKAEGT GMGIYIAERL IQGHYGGRIT FDDNPGGGTL VTLYFAKPDS NKTQQEDKPQ
TEEV
|
|---|
| |