Gene Shew_2335 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2335 
SymbolsecD 
ID4922115 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp2728326 
End bp2730176 
Gene Length1851 bp 
Protein Length616 aa 
Translation table11 
GC content54% 
IMG OID640163920 
Productpreprotein translocase subunit SecD 
Protein accessionYP_001094460 
Protein GI127513263 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00244246 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTTAAATA AATACCCAAT GTGGAAGAAC CTGATGGTGG CGTTGATCAT CGCCGTCGGT 
GCCTTCTACG CAATACCAAA TTTATTTGGT GAAGATCACG CGGTGCAAGT CGTGGCCACA
CGTGGCGCGG AAGTTAATGC TTCGACTCAG AGTGAAGTCA CTGACATCCT GTCGGCGAAA
GGCATCGCGG TGAAGCGTTC AGAGTTGGAA AACGGTCAGC TATTGGTACG TGTTGCCGAT
GCGGACCAGC AACTGCTGGC GAAAGAAGCA ATTGCCGAGG TACTCGGCGA CAAATATATC
GTGGCGCTTA ACCTGGCCCC GGCTACGCCT CAGTGGCTGG AGTCTATGGG TGGTAGCCCG
ATGAAGCTGG GTCTGGACCT TCGCGGTGGT GTGCACTTCC TGATGGAAGT GGACATGAGC
GAGGCGATCC GCAAGATGAC CGAAGCGAAA ATTGCCGATT TCAGAACCGA TCTTCGTGGT
GAAAAAATTC GTTATGCGGG TATTCGCAAT ACCCCTAAAG GGATTGAGAT CAAGTTTCGT
GATGCCGAGA ATTTAGCCAA GGCAGAACGA TTCCTCAAGA GCCGCACTAA CGAGATGGTG
TTCGTCGATG CGTCGTCTGG TAGCGATTTC ATGCTGCTGG CGAACATGAG CGAGATCTAC
CTCAAGCAAG TGAAAGAGGA AGCGCTGCAG CAGAACATCA CCACCTTGCG TAATCGTGTA
AACGAGTTGG GTGTTGCCGA GCCAGTGGTT CAGCGCCAAG GCGCGGAGCG CATCATCGTC
GAATTGCCGG GTGTTCAAGA CACGGCCCGC GCCAAGGATA TCCTGGGGGC TACCGCGTCT
ATCGAATTCC ACATGGTAGA CGAGAAGGCC GATGCCGCGG CGATTGCAGC CGGTCGCGTG
TCTCCAGGTT CGCAGATCTA TGATCGTCGT GAAGGCGGTA AAGTGGCTCT GCAAAAAGAG
GTAATGCTCA CAGGTGACCA TATTCAGGGC GCACAGCCAA GTTTCGATGA ATACAGCCGT
CCTCAGGTGT CTATTAACCT GGACTCTAAG GGTGGTTCTA TCTTCTCCAA CGTGACCAAG
GACAACATCG GCAAGCCGAT GGCGACCCTG TTCATCGAGT ATAAAGATAA CGGTGCCAAG
AATCCTGACG GCAGCGTGAA GATGGATAAG ATCGAAGAGG TGATTTCGGT TGCGACCATC
CAGGCGCGTC TGGGCCGTAA CTTCGTTATT AACGGTCTTG ACCACTCTGA AGCGCAAAGC
CTTGCCCTCT TGCTACGTGC CGGTGCCTTG ATCGCGCCAG TCTCAATTGT CGAAGAACGC
ACCATTGGTC CTAGCCTGGG TGCGGAAAAC ATCGACAACG GTCTGCAGGC GATGATCTGG
GGTATGGCGG TCGTGTTAAT CTTCATGCTG GTCTACTACC GCGGCTTTGG CCTTATCGCT
AACCTGGCGC TGACGGCTAA CCTAGTAATG GTAGTGGGCG TCATGTCTAT GATCCCTGGC
GCCGTGCTGA CCCTACCGGG TATTGCCGGT ATGGTATTGA CAGTCGGTAT GGCGGTTGAC
GGTAACGTAC TGATTTACGA ACGTATTCGT GAAGAGTTAC GTGCCGGACG CAGCGTTCAG
CAGGCGATCC ATGAAGGTTA TGGCAACGCG TTCTCAACCA TTGCCGATGC CAACATCACC
ACCTTTATGA CGGCCTTGAT CCTGTTTGCC GTGGGTACCG GCGCCGTGAA AGGCTTCGCC
GTGACCCTGA TGATAGGTAT CGCGACCTCT ATGTTCACCG CCATCGTGGG TACTCGCTCG
ATAGTTAACG CTATCTGGGG CGGTAAGCGC GTGAAGAAAC TGTCTATTTA A
 
Protein sequence
MLNKYPMWKN LMVALIIAVG AFYAIPNLFG EDHAVQVVAT RGAEVNASTQ SEVTDILSAK 
GIAVKRSELE NGQLLVRVAD ADQQLLAKEA IAEVLGDKYI VALNLAPATP QWLESMGGSP
MKLGLDLRGG VHFLMEVDMS EAIRKMTEAK IADFRTDLRG EKIRYAGIRN TPKGIEIKFR
DAENLAKAER FLKSRTNEMV FVDASSGSDF MLLANMSEIY LKQVKEEALQ QNITTLRNRV
NELGVAEPVV QRQGAERIIV ELPGVQDTAR AKDILGATAS IEFHMVDEKA DAAAIAAGRV
SPGSQIYDRR EGGKVALQKE VMLTGDHIQG AQPSFDEYSR PQVSINLDSK GGSIFSNVTK
DNIGKPMATL FIEYKDNGAK NPDGSVKMDK IEEVISVATI QARLGRNFVI NGLDHSEAQS
LALLLRAGAL IAPVSIVEER TIGPSLGAEN IDNGLQAMIW GMAVVLIFML VYYRGFGLIA
NLALTANLVM VVGVMSMIPG AVLTLPGIAG MVLTVGMAVD GNVLIYERIR EELRAGRSVQ
QAIHEGYGNA FSTIADANIT TFMTALILFA VGTGAVKGFA VTLMIGIATS MFTAIVGTRS
IVNAIWGGKR VKKLSI