Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2335 |
Symbol | secD |
ID | 4922115 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 2728326 |
End bp | 2730176 |
Gene Length | 1851 bp |
Protein Length | 616 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640163920 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_001094460 |
Protein GI | 127513263 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00244246 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTTAAATA AATACCCAAT GTGGAAGAAC CTGATGGTGG CGTTGATCAT CGCCGTCGGT GCCTTCTACG CAATACCAAA TTTATTTGGT GAAGATCACG CGGTGCAAGT CGTGGCCACA CGTGGCGCGG AAGTTAATGC TTCGACTCAG AGTGAAGTCA CTGACATCCT GTCGGCGAAA GGCATCGCGG TGAAGCGTTC AGAGTTGGAA AACGGTCAGC TATTGGTACG TGTTGCCGAT GCGGACCAGC AACTGCTGGC GAAAGAAGCA ATTGCCGAGG TACTCGGCGA CAAATATATC GTGGCGCTTA ACCTGGCCCC GGCTACGCCT CAGTGGCTGG AGTCTATGGG TGGTAGCCCG ATGAAGCTGG GTCTGGACCT TCGCGGTGGT GTGCACTTCC TGATGGAAGT GGACATGAGC GAGGCGATCC GCAAGATGAC CGAAGCGAAA ATTGCCGATT TCAGAACCGA TCTTCGTGGT GAAAAAATTC GTTATGCGGG TATTCGCAAT ACCCCTAAAG GGATTGAGAT CAAGTTTCGT GATGCCGAGA ATTTAGCCAA GGCAGAACGA TTCCTCAAGA GCCGCACTAA CGAGATGGTG TTCGTCGATG CGTCGTCTGG TAGCGATTTC ATGCTGCTGG CGAACATGAG CGAGATCTAC CTCAAGCAAG TGAAAGAGGA AGCGCTGCAG CAGAACATCA CCACCTTGCG TAATCGTGTA AACGAGTTGG GTGTTGCCGA GCCAGTGGTT CAGCGCCAAG GCGCGGAGCG CATCATCGTC GAATTGCCGG GTGTTCAAGA CACGGCCCGC GCCAAGGATA TCCTGGGGGC TACCGCGTCT ATCGAATTCC ACATGGTAGA CGAGAAGGCC GATGCCGCGG CGATTGCAGC CGGTCGCGTG TCTCCAGGTT CGCAGATCTA TGATCGTCGT GAAGGCGGTA AAGTGGCTCT GCAAAAAGAG GTAATGCTCA CAGGTGACCA TATTCAGGGC GCACAGCCAA GTTTCGATGA ATACAGCCGT CCTCAGGTGT CTATTAACCT GGACTCTAAG GGTGGTTCTA TCTTCTCCAA CGTGACCAAG GACAACATCG GCAAGCCGAT GGCGACCCTG TTCATCGAGT ATAAAGATAA CGGTGCCAAG AATCCTGACG GCAGCGTGAA GATGGATAAG ATCGAAGAGG TGATTTCGGT TGCGACCATC CAGGCGCGTC TGGGCCGTAA CTTCGTTATT AACGGTCTTG ACCACTCTGA AGCGCAAAGC CTTGCCCTCT TGCTACGTGC CGGTGCCTTG ATCGCGCCAG TCTCAATTGT CGAAGAACGC ACCATTGGTC CTAGCCTGGG TGCGGAAAAC ATCGACAACG GTCTGCAGGC GATGATCTGG GGTATGGCGG TCGTGTTAAT CTTCATGCTG GTCTACTACC GCGGCTTTGG CCTTATCGCT AACCTGGCGC TGACGGCTAA CCTAGTAATG GTAGTGGGCG TCATGTCTAT GATCCCTGGC GCCGTGCTGA CCCTACCGGG TATTGCCGGT ATGGTATTGA CAGTCGGTAT GGCGGTTGAC GGTAACGTAC TGATTTACGA ACGTATTCGT GAAGAGTTAC GTGCCGGACG CAGCGTTCAG CAGGCGATCC ATGAAGGTTA TGGCAACGCG TTCTCAACCA TTGCCGATGC CAACATCACC ACCTTTATGA CGGCCTTGAT CCTGTTTGCC GTGGGTACCG GCGCCGTGAA AGGCTTCGCC GTGACCCTGA TGATAGGTAT CGCGACCTCT ATGTTCACCG CCATCGTGGG TACTCGCTCG ATAGTTAACG CTATCTGGGG CGGTAAGCGC GTGAAGAAAC TGTCTATTTA A
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Protein sequence | MLNKYPMWKN LMVALIIAVG AFYAIPNLFG EDHAVQVVAT RGAEVNASTQ SEVTDILSAK GIAVKRSELE NGQLLVRVAD ADQQLLAKEA IAEVLGDKYI VALNLAPATP QWLESMGGSP MKLGLDLRGG VHFLMEVDMS EAIRKMTEAK IADFRTDLRG EKIRYAGIRN TPKGIEIKFR DAENLAKAER FLKSRTNEMV FVDASSGSDF MLLANMSEIY LKQVKEEALQ QNITTLRNRV NELGVAEPVV QRQGAERIIV ELPGVQDTAR AKDILGATAS IEFHMVDEKA DAAAIAAGRV SPGSQIYDRR EGGKVALQKE VMLTGDHIQG AQPSFDEYSR PQVSINLDSK GGSIFSNVTK DNIGKPMATL FIEYKDNGAK NPDGSVKMDK IEEVISVATI QARLGRNFVI NGLDHSEAQS LALLLRAGAL IAPVSIVEER TIGPSLGAEN IDNGLQAMIW GMAVVLIFML VYYRGFGLIA NLALTANLVM VVGVMSMIPG AVLTLPGIAG MVLTVGMAVD GNVLIYERIR EELRAGRSVQ QAIHEGYGNA FSTIADANIT TFMTALILFA VGTGAVKGFA VTLMIGIATS MFTAIVGTRS IVNAIWGGKR VKKLSI
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