Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2328 |
Symbol | |
ID | 4922108 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 2721211 |
End bp | 2722908 |
Gene Length | 1698 bp |
Protein Length | 565 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640163913 |
Product | signal transduction histidine kinase, LytS |
Protein accession | YP_001094453 |
Protein GI | 127513256 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3275] Putative regulator of cell autolysis |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0659282 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.34431 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTTTAA TCCTCCTGCT CACCCAACAG ATGTGCCTCT ACCTGGTCAT AGTGTACCTG CTGAGTAAGA CGCCGCTGTT TAAGCTATTT GCCGAGACGG CAACCCGTCT GCCCCATAAG ATCTACATCT ATCTTATCTT CTCGGGTTTC TGCATCATGG CCACCTATTT TGGTGAGCAG ACCAACGATG CCATCGCCAA TACCCGCGCC ATGGGCGCCG TGCTCGGCGG CCTGTTAGGC GGACCGGTTA CCGGCTTTTT GGTGGGCCTA ACCGGCGGCC TGCACAGATA CAGCATGGGC GGCTTTACCG ACTTGGCCTG TGCCATCTCC ACCACGTTAG AGGGCCTATC GGCGGGCATA GTCGGCTTTT ACCTGCGTAA GCAAAATCGC AGCGAGATGG TCTATGCGCC GCTGCTGGTC GCCCTAGTCA CCTTCTCGGC CGAGATGCTA CAGATGGCGC TGATCCTGGC CATCGCCAAG CCCTATGGTG ATGCCCTAGC CCTGGTGAAA CAGATAGCTC TGCCCATGTT GACGGTCAAC TCCATAGGCG CCGCCCTCTT TATGAGCATG GTGCGGGATC AGAAGACCAT GTTCGACAAG CTCTCCTCTG CCTTCTCCAC CAAGGCACTT AAGATTGCCG AGCGCAGCGT GGGGATCCTC TCCAAGGGGT TCGATCAGGA GGGCAGCACT AAGGTGGCGC AGATCATCCT AGAGGAGACT AACGTCGGCG CGGTGGCCAT TACCGATAGG GAGAAGCTGC TGGCGTTTAT CGGCATCGGT GACGACCACC ATATTCCCGG CACCCCCATC TCCTCAAAGA TCACCCAAGA TGCCATAGAG CAGAACTGTG TCATGTTCGC CGACGGTGTG GAGACCCCCT ATGCCTGCTC CATCTCGCCC CAGTGTCGCC TCGGCTCCAG CCTGGTGATC CCACTGAGGT GCGAGTCTGA GGTGATAGGC ACCATCAAAC TCTATGAGCC CAAGAATAAG CTGTTTCTCA ACATCAACCG CACGCTGGGT GAAGGGATCG CCAGGCTGAT GAGTAACCAG ATCCTCTACG GCCGCTACGA GCTGCAACAG AGCCTGCTGA CTCAGGCGGA GCTCAAGCTG CTGCAGGCGC AAGTTAATCC CCATTTCCTG TTTAACGCGC TCAATACCAT CGCCGCCATC ATAGGCAAGG ATCCCCTGAT GGCGAGGCAA CTGCTCCAAC ACCTGTCGCA GTTTTTGCGC ATCAACCTCA AGCGCACCAC AGGCCTGGTG ACCCTCAGCG ATGAGCTGGA ACATATCGAC GCCTACCTCA CCATAGAGAA AGCGAGATTT ATCGATAAGC TCAGCGTGCA TATCGACATT CCAGCAACGC TGCACCAGTA CCGCCTACCG GCCTTTACCC TGCAGCCCAT CATAGAGAAT GCGGTAAAGC ATGGTACCTC ACACCTGCTG GAGCCCGGGG AAATCTGGGT CAGTGGCAGA GCCGAGCAAG ATTTATTAAT ATTGGAAGTA AAAGATAATG CAGGTCTGTA TCGGGAAGAG CTCAATGCAG ACACCTCAGG ATTAGGTATG TCCATCGTCC ATAAGCGGAT CCAGAGCCTG TTTGGCCCCC ACTATGGCGT TAAGATCAAC TGCGAGAAGG ACCGTTTTAC TCAAGTCATT ATTACCCTGC CGCTAAATGA TGTGGCACAG ACGGAACCCA CAGCGTGA
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Protein sequence | MPLILLLTQQ MCLYLVIVYL LSKTPLFKLF AETATRLPHK IYIYLIFSGF CIMATYFGEQ TNDAIANTRA MGAVLGGLLG GPVTGFLVGL TGGLHRYSMG GFTDLACAIS TTLEGLSAGI VGFYLRKQNR SEMVYAPLLV ALVTFSAEML QMALILAIAK PYGDALALVK QIALPMLTVN SIGAALFMSM VRDQKTMFDK LSSAFSTKAL KIAERSVGIL SKGFDQEGST KVAQIILEET NVGAVAITDR EKLLAFIGIG DDHHIPGTPI SSKITQDAIE QNCVMFADGV ETPYACSISP QCRLGSSLVI PLRCESEVIG TIKLYEPKNK LFLNINRTLG EGIARLMSNQ ILYGRYELQQ SLLTQAELKL LQAQVNPHFL FNALNTIAAI IGKDPLMARQ LLQHLSQFLR INLKRTTGLV TLSDELEHID AYLTIEKARF IDKLSVHIDI PATLHQYRLP AFTLQPIIEN AVKHGTSHLL EPGEIWVSGR AEQDLLILEV KDNAGLYREE LNADTSGLGM SIVHKRIQSL FGPHYGVKIN CEKDRFTQVI ITLPLNDVAQ TEPTA
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