| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2313 |
|---|
| Symbol | hscA |
|---|
| ID | 4922163 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 2709291 |
|---|
| End bp | 2711153 |
|---|
| Gene Length | 1863 bp |
|---|
| Protein Length | 620 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640163898 |
|---|
| Product | chaperone protein HscA |
|---|
| Protein accession | YP_001094438 |
|---|
| Protein GI | 127513241 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0443] Molecular chaperone |
|---|
| TIGRFAM ID | [TIGR01991] Fe-S protein assembly chaperone HscA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.677318 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCACTTT TGCAGATCGC TGAACCCGGA CAGAGCGCCG CGCCGCACCA GCACAGGCTG
GCGGTAGGCA TTGACTTAGG TACGACCAAC TCACTGGTGG CGGCCGTGCG CAGTGGCGTA
GCCGATACCC TGGCCGACGA ATCTGGTCGT CATGCCCTGG CCTCCGTTGT GCGTTACAGC
GAAGACGGAG TGCAGGTTGG CGTGGATGCC GAGCGTTTCT CCGCCCAAGA TCCACTCAAT
ACCGTGGTCT CTGTTAAGCG TTTCATGGGG CGCAGCCTGA GTGATATCCA GGCCAAGGAT
GCCTCGCTAC CCTATAATTT CTCTGCCAGC GAAAATGGCC TGCCACTGTT TAATACCCAG
GCCGGTCAGT TCAACCCTAT TCAGATCTCT GCCGATATCC TAAGACCCTT AGTGGATCGC
GCCGAGAAGA CCCTAGGGGG GTCCTTAGAA GGCGTAGTGA TCACAGTGCC GGCCTACTTC
GATGACGCTC AGCGTCAGGG CACCAAAGAG GCGGCCAGCC TGCTTGGGGT CAAGGTGCTG
CGTCTACTCA ACGAGCCGAC GGCGGCGGCC ATTGCCTACG GACTGGACTC GGGCCAGGAA
GGGGTGATTG CCATCTATGA CCTGGGTGGC GGGACCTTCG ATATCTCGAT CCTGCGCCTG
AACAAAGGCG TGTTTGAGGT ACTGGCTACC GGCGGCGACT CGGCGCTGGG TGGTGATGAT
TTCGACCATG CCCTGGCCGC TCACCTGCAG GAGAGCTGGC AACTGACCAG CCTTACGGCC
AGTGAGCGCC GCGCACTCTT AATCGAGAGT CGCCGCGTGA AAGAGGCCCT GACCGAACAG
GCCAGCGTGA CTGCGAGTCT GACCCTGGAG CAGGGCATAG TGCATGAACA AGTTGTCGAC
AAGGCGCAGT TTGACGCTCT TATCGAATCT CTGGTGAAGA AGACCATTGC CAGCTGTCGC
CGAGCACTGC GCGATGCGGC GATCAGCAAC GATGAAGTGC TGGAAACCGT GATGGTGGGC
GGCTCGACCC GCGTGCCTCT GGTGCGTGAG CGTGTCGAAG GCTTCTTTGG TAAGGCGCCG
TTGACCTCAA TCGATCCTGA CCGTGTGGTC GCCATCGGCG CCGCGATTCA GGCTGATATC
CTGGTGGGTA ACAAGCCAGA ATCAGATCTG CTTCTGCTGG ATGTGATCCC GCTGTCCCTG
GGTATCGAAA CCATGGGTGG CCTGGTGGAG AAGGTGGTGT CTCGTAACAC CACGATTCCG
GTAGCCCGCG CCCAGGAGTT CACCACCTTT AAGGATGGTC AGACGGCCAT GGCATTTCAT
GTGGTGCAGG GCGAGCGTGA GCTGGTGGCC GATTGTCGCT CCTTGGCACG CTTTACCCTC
AAGGGCATTC CGCCTATGGC AGCCGGCGCG GCGCATATTC GCGTCACCTT CCAGGTCGAT
GCCGATGGCT TGCTCAGCGT GACCGCCATG GAGAAGTCCT CTGGCGTGCA GGCGAGCATT
CAGGTGAAGC CTTCCTTCGG TCTGACCGAC GAAGAGATCG GCACCATGCT CAAAGATTCG
ATGGCCCATG CCAAAGAGGA TATCGAGCGC CGCATGTTAG CGGAGCAGCA GGTGGAAGCG
GCCAGGGTAT TAGAGTCCCT GTCGGCGGCG CTGGCCAAAG ATGGCGATCT GCTGGACGAA
GCGGAAGCGG CGACCATCCA GGCGGGGATG GCCAATTTGG CACAGGTGGC GAGCCAGTCG
GATACTGACG CCATCGAGAA GGCAATTGCT GCGCTGGACG ATGCCAGCCA GGACTTTGCC
GCGAAACGTA TGGATAATTC CATTCGATTG GCGCTCAAGG GCCAGTCGGT TGACAATATA
TAG
|
|---|
| Protein sequence | MALLQIAEPG QSAAPHQHRL AVGIDLGTTN SLVAAVRSGV ADTLADESGR HALASVVRYS
EDGVQVGVDA ERFSAQDPLN TVVSVKRFMG RSLSDIQAKD ASLPYNFSAS ENGLPLFNTQ
AGQFNPIQIS ADILRPLVDR AEKTLGGSLE GVVITVPAYF DDAQRQGTKE AASLLGVKVL
RLLNEPTAAA IAYGLDSGQE GVIAIYDLGG GTFDISILRL NKGVFEVLAT GGDSALGGDD
FDHALAAHLQ ESWQLTSLTA SERRALLIES RRVKEALTEQ ASVTASLTLE QGIVHEQVVD
KAQFDALIES LVKKTIASCR RALRDAAISN DEVLETVMVG GSTRVPLVRE RVEGFFGKAP
LTSIDPDRVV AIGAAIQADI LVGNKPESDL LLLDVIPLSL GIETMGGLVE KVVSRNTTIP
VARAQEFTTF KDGQTAMAFH VVQGERELVA DCRSLARFTL KGIPPMAAGA AHIRVTFQVD
ADGLLSVTAM EKSSGVQASI QVKPSFGLTD EEIGTMLKDS MAHAKEDIER RMLAEQQVEA
ARVLESLSAA LAKDGDLLDE AEAATIQAGM ANLAQVASQS DTDAIEKAIA ALDDASQDFA
AKRMDNSIRL ALKGQSVDNI
|
|---|
| |