| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2309 |
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| Symbol | |
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| ID | 4922159 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2706729 |
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| End bp | 2707859 |
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| Gene Length | 1131 bp |
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| Protein Length | 376 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640163894 |
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| Product | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding |
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| Protein accession | YP_001094434 |
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| Protein GI | 127513237 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00123452 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATTG TAGCCGATGA AAACATGCCC TATGTCGAAG CCCTGTTTGC CGATCTTGGC
GAGGTGGTGA TGGTCGATGG CCGTACCCTG ACCCAGGCTC AGGTGAAAGA TGCCGATGTG
CTGCTGGTGC GCTCTGTCAC TAAGGTGAAT AAGAGTCTAC TGGATGGCTG CGACAGGCTC
TCCTTCGTGG GCAGCGCCAC CATAGGCATG GACCATCTGG ATTTGGACTA TCTTAAGCAG
CGTGGCATCT TCTGCACCAA TGCGCCGGGC TGTAACGCGG TGGCCGTCGG CGAATATGCC
TTCAATGCCA TGCTGGAGCT GGCCAGACGC TTTCACAACC CGCTTAAGGG CAAGACGGTC
GGCATAGTCG GCGCAGGTAA TACGGGCACG GCGCTACAAA AGTGCCTTGA GGCCTATGGG
GTGAAGACCC TGCTTAACGA TCCCTTACTT GAACAAAGCG GCGATGAGCG AGAGTTTGTC
TCGTTAGATG AGCTTATTGA GCGCTGCGAT GTGATCTCCC TGCATGTGCC ACTGACTCGA
GATGGCGAGC ATCCCACCCA CTATCTGTTT GATAAGAGGC GCCTGAATGC ACTTGCCGAA
GACACCTGGC TGCTGAACTG CTGCCGCGGT GAGGTGATCG ATAACCGCGC GCTTATCGAG
GTGAAACAGC AGCGCAGCGA TCTCAAGCTG GTGCTTGATG TATGGGAGGG GGAGCCGCTG
CCAATGCCTG AGTTGGTGCC ACTGGTTGAG GTAGCCACCC CACACATAGC TGGCTATAGC
CTGGAGGGCA AGGCTCGAGG CACCTTCATG CTGTATCAGG CCTTGATGGC TCAGCTGGGC
AGGGCGGTCG ACAAGTCGCT TGCCAGCCTG TTGCCACCGC TCTGGAGTCA TCAGTTGTCA
CCCTTGTCTG TGCCCGATGA AAAGGCCTTG CTCTGCCTGG TGCGCCTGGT CTATGACCTG
CGCGATGACG ACGAACTGTT TCGCCAGCGC TTTCAAAATA ACAAAGGCTT CGACCTGATG
AGAAAAAATC ATAAGCATCG ACGTGAATTT AGCGCGTTAA TGCTAGCCAA TACCGCGGGT
TCTGATGTAG ATTGGTTGCT CGAATTAGGT TTTTCAGGAG TCGGTCTGTA A
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| Protein sequence | MKIVADENMP YVEALFADLG EVVMVDGRTL TQAQVKDADV LLVRSVTKVN KSLLDGCDRL
SFVGSATIGM DHLDLDYLKQ RGIFCTNAPG CNAVAVGEYA FNAMLELARR FHNPLKGKTV
GIVGAGNTGT ALQKCLEAYG VKTLLNDPLL EQSGDEREFV SLDELIERCD VISLHVPLTR
DGEHPTHYLF DKRRLNALAE DTWLLNCCRG EVIDNRALIE VKQQRSDLKL VLDVWEGEPL
PMPELVPLVE VATPHIAGYS LEGKARGTFM LYQALMAQLG RAVDKSLASL LPPLWSHQLS
PLSVPDEKAL LCLVRLVYDL RDDDELFRQR FQNNKGFDLM RKNHKHRREF SALMLANTAG
SDVDWLLELG FSGVGL
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