| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2306 |
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| Symbol | truA |
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| ID | 4922299 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2701789 |
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| End bp | 2702574 |
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| Gene Length | 786 bp |
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| Protein Length | 261 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640163891 |
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| Product | tRNA pseudouridine synthase A |
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| Protein accession | YP_001094431 |
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| Protein GI | 127513234 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0101] Pseudouridylate synthase |
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| TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0438465 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCGCGTAG CATTAGGTAT CGAATATGAT GGCAGCCGTT ATTTTGGCTG GCAACGTCAG
GCCGAGGTAG ATTCGGTACA AGCCCAGCTC GAGAGAGCCC TATCTTTCGT TGCCAACGAA
CCTATTTCGA TTCAGTGCGC CGGACGTACC GACGCAGGCG TTCATGCTAC GGGCCAGGTG
GTGCATTTCG AGACCAATGC CGTGCGTAAA GAGAGTGCCT GGACCCTAGG GGTCAATGTC
AACCTGCCGG ATGATATCGC CGTGCGCTGG GCCAAGGATG TGGATGACGA ATTCCACGCC
CGCTTTACCG CCACCGCCCG CCGTTATCGC TACATGATCT ATAACCATCA GTTTAGACCC
GGCATTCTCC GCTCTGGAGT GAGCCACTAT CCGGGGCAGA TCGATGAGGC CAAGATGCAT
GAGGCGGCCC AGTTCCTGCT GGGTGAGCAG GACTTTACCA GCTTTCGCGC CATTCAATGC
CAGTCGAACA CCCCATTTCG CTGCGTTCAC GAGGTCAATG TGACCCGTCA GGGCATGTAT
ATCTGTGTCG ACATCAAGGC CAACGCCTTC TTGCATCACA TGGTGCGTAA TATCGTCGGC
TCCCTGCTCG AGGTGGGTTA TGGTCGCCAA CCTGTGAGCT GGATTAAGGA GCTGCTGGCG
CTGAAGGATC GCACTCAGGC GGCGGCGACT GCTAAGCCTA ACGGTCTCTA CCTGGTGGAT
GTGACCTATC CCGAGCACTA TGCCTTACCT AAGCTGGCCC TGGGGCCTCT GTTTATGCTC
GACTAA
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| Protein sequence | MRVALGIEYD GSRYFGWQRQ AEVDSVQAQL ERALSFVANE PISIQCAGRT DAGVHATGQV
VHFETNAVRK ESAWTLGVNV NLPDDIAVRW AKDVDDEFHA RFTATARRYR YMIYNHQFRP
GILRSGVSHY PGQIDEAKMH EAAQFLLGEQ DFTSFRAIQC QSNTPFRCVH EVNVTRQGMY
ICVDIKANAF LHHMVRNIVG SLLEVGYGRQ PVSWIKELLA LKDRTQAAAT AKPNGLYLVD
VTYPEHYALP KLALGPLFML D
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