| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2281 |
|---|
| Symbol | |
|---|
| ID | 4922303 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 2664207 |
|---|
| End bp | 2665766 |
|---|
| Gene Length | 1560 bp |
|---|
| Protein Length | 519 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640163866 |
|---|
| Product | flavocytochrome c |
|---|
| Protein accession | YP_001094406 |
|---|
| Protein GI | 127513209 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
|---|
| TIGRFAM ID | [TIGR01813] flavocytochrome c |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAGA AAGATCTGAT AAGCCCGGGT CGTCGCCAGC TGTTAAAAGG CGGCGCCGCG
ATGGCCGTCA GTGTGGCGGG ACTGGGCGCC ATGAGCGCCC AGGCGGCCGA GTGTAGTGGC
GATAAACCGC CCCATTTTGA CGAGATAGTC GATGTCTTGG TGATCGGCAG CGGTTTCGCC
GGTATGTCGG CGGCGCTGCA GGCCAAAGAG GCCGGTGCCA GCGTCATGGT GATCGACAAG
ATGCCCGTGT TTGGCGGCAA CTCCACCATC AATGGCGGCG CCATGGCGGT GGCCGGTTCT
AAGTTGCAGG CCAAGGAGGG GATCAAGGAT TCGGTCGATA CCATGGTGGC CGACATGCTC
AAGGCGGGTC GCGGCATGAA CGATGTCGAG ATGCTCAAGC TGGTGTGTAA CGGCACCGCC
GAGTCCTGTC AGTGGCTGGA GGCCTATGGC GTCGAGTGGA AGCCTTTTGT GCAGCACTTC
GGTGGTCACT CGCTGCCACG TGTGCTGCAG ACGGTGCAGA GCTCTGGCGC CGGCATCATT
CGTCCCCTGA TCAAGGCGGC TAAGCAACAT GGTATCGAGA TGCGAAATCA GACCAAGCTC
GAATCTTTCG TGAAAGATCC GGCCGGTCGC GTGATCGGTG TCCAAGTTCG CGATGGCTAT
TATTTCCCGC AGGAGCGCAC GGGTAAAATG CGGCTTATCG GCGCGCGCAA AGGGGTGATC
ATGGCCACCG GCGGCTTCTC TCGCGATCTC GAGTATCGTC AGATGCAGCA GCCTGAATTA
AATGGCGATC TCGACTCGAC CAACCATCCC GGCGCGACCT CTGAGGCCCT CAAGCAGATG
ATGTTGATCG GCGCCAACCC GATCCATCTG GATCAGATCC AGCTCGGTCC CTGGGCATCA
CCGGACGAGA AGGGCTTCGG CACCGCCTCT CAGTTCAACA CCATCGCTAC TTATCCCAGC
GGCATAGTGG TGGATGTGCG TACCGGCGAG CGTTTCTTCA ACGAGCTGGC TGACCGTAAG
GCCCGCGCCG ACGCCATCAT GACCCGCCGT GATGACCAGG GTAATCCCGT CTATCCCGTG
GGCTTTACCA ATGCCAAGGG CGCGGCCCAG GCCCAGACAT TGGAGTGGGG TCTTAAGTAC
AAGGTGATCC AGAAGGCGGA CACATTAGAA GAACTCGCGG CCCTGTATCA GATCCCCGCC
AAGGCATTGA AAGCCCAGGT GGCGCGCTGG AACGACGCGG TAAAAGCCGG CGAAGACAAG
GAGTTTGGTC GCCCCATGCA GAAGGCCATG GCGCTGGAAG AGGGCCCTTG GTATGGCGTG
CGTATGTGGC CCAAGGTGCA CTACTGCATG GGCGGCGTGA AGGTGAATAC TCAGTCTCAG
GTGCTGCACC TGGTGAGCAA CGAGCCGATC GACGGCCTGT ATGCCGCCGG TGAGGCGACG
GGTGGCATCC ATGGGGCGAG CCGTCTCGGC GCCTGCGCCG TGGCAGAAGG TGTGGTGACG
GGCAGAAACG CCGGTCGTAT CTGCGCGGCG AGCGCGGCAA TCGAATTAAA ACAGGCTTAG
|
|---|
| Protein sequence | MKQKDLISPG RRQLLKGGAA MAVSVAGLGA MSAQAAECSG DKPPHFDEIV DVLVIGSGFA
GMSAALQAKE AGASVMVIDK MPVFGGNSTI NGGAMAVAGS KLQAKEGIKD SVDTMVADML
KAGRGMNDVE MLKLVCNGTA ESCQWLEAYG VEWKPFVQHF GGHSLPRVLQ TVQSSGAGII
RPLIKAAKQH GIEMRNQTKL ESFVKDPAGR VIGVQVRDGY YFPQERTGKM RLIGARKGVI
MATGGFSRDL EYRQMQQPEL NGDLDSTNHP GATSEALKQM MLIGANPIHL DQIQLGPWAS
PDEKGFGTAS QFNTIATYPS GIVVDVRTGE RFFNELADRK ARADAIMTRR DDQGNPVYPV
GFTNAKGAAQ AQTLEWGLKY KVIQKADTLE ELAALYQIPA KALKAQVARW NDAVKAGEDK
EFGRPMQKAM ALEEGPWYGV RMWPKVHYCM GGVKVNTQSQ VLHLVSNEPI DGLYAAGEAT
GGIHGASRLG ACAVAEGVVT GRNAGRICAA SAAIELKQA
|
|---|
| |