Gene Shew_2278 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2278 
Symbol 
ID4922300 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp2660936 
End bp2661850 
Gene Length915 bp 
Protein Length304 aa 
Translation table11 
GC content58% 
IMG OID640163863 
ProductLysR family transcriptional regulator 
Protein accessionYP_001094403 
Protein GI127513206 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.255279 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCTTGG ATAGAATCGA TACCATGAAG GCCTTTACCG CCGTGGTGCA GGAGGGTTCC 
TTCACCAAGG CGGCAGACAG GCTTGGGCTC TCCTCACAGC TGGTGAGCAA GTATGTGTCT
CAGCTCGAGG AGCATCTCAA GGTGCGCCTG CTCAATCGCA CCACGCGGCG GGTCAACGTG
ACCGAGGCGG GCAGGGCCTA TTTCGAGCGC TGTCAGCAGG TGCTTATCGA TATCGAGGAG
ATGGACAACG CCCTGACCAA CCTCAGCGAG ACCGCCTCGG GTCTGCTTAA GGTCAGCGCC
CCCATGTCTT TCGGCATTCA CCATCTGCCC AGTGCCCTGG TGCAGTTTCA GCAGCAACAC
CCGGATGTCA GGCTGGATAT CACCCTGACC GACAAGAAGG TGGATCTGCT GGAGGATGGC
GTCGATGTGG CGCTGCGCAT CGGTCAGCTT ACAAGCTCTT CGCTTATCGC CAAGAAGCTA
ACCCCGATCA AGCTGGTTGT CTGCGCCTCC CCCGAGTATC TGGCCGAGCG CGGTGAGCCC
AAGACCCCGG CGGATCTTAT CCATCACAAC TATCTGCATT TTAGTTATTC GGATCTGGGC
GCGGCCTTCG GTCGTTTCGG CGAGCACTTC TCAGCGCTGA AGATCCCAAG CGATCTGGCC
TGTAACAACG GCGACATGCT GGTGGAGGCC GCCATCGCCG GTCGTGGCAT AGTGGTGCAG
CCTACCTTCT TGGTGAGCAA GGCCCTTCGT AGTGGCAAGC TCAAAGCGAT CCTCACCGAC
TATACCCCAG AGCCTTTCGG CCTGTACGCC GTCTATGTGC ACCGTAAGTT TCTCGCCAGC
AAGGTGCGCT GTTTCGTCGA TGCTTTGAGC CAATACTATG GCAAGACCCC TTACTGGGAT
GCGCTAGACG ACTAG
 
Protein sequence
MALDRIDTMK AFTAVVQEGS FTKAADRLGL SSQLVSKYVS QLEEHLKVRL LNRTTRRVNV 
TEAGRAYFER CQQVLIDIEE MDNALTNLSE TASGLLKVSA PMSFGIHHLP SALVQFQQQH
PDVRLDITLT DKKVDLLEDG VDVALRIGQL TSSSLIAKKL TPIKLVVCAS PEYLAERGEP
KTPADLIHHN YLHFSYSDLG AAFGRFGEHF SALKIPSDLA CNNGDMLVEA AIAGRGIVVQ
PTFLVSKALR SGKLKAILTD YTPEPFGLYA VYVHRKFLAS KVRCFVDALS QYYGKTPYWD
ALDD