| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2278 |
|---|
| Symbol | |
|---|
| ID | 4922300 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 2660936 |
|---|
| End bp | 2661850 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640163863 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001094403 |
|---|
| Protein GI | 127513206 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.255279 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCTTGG ATAGAATCGA TACCATGAAG GCCTTTACCG CCGTGGTGCA GGAGGGTTCC
TTCACCAAGG CGGCAGACAG GCTTGGGCTC TCCTCACAGC TGGTGAGCAA GTATGTGTCT
CAGCTCGAGG AGCATCTCAA GGTGCGCCTG CTCAATCGCA CCACGCGGCG GGTCAACGTG
ACCGAGGCGG GCAGGGCCTA TTTCGAGCGC TGTCAGCAGG TGCTTATCGA TATCGAGGAG
ATGGACAACG CCCTGACCAA CCTCAGCGAG ACCGCCTCGG GTCTGCTTAA GGTCAGCGCC
CCCATGTCTT TCGGCATTCA CCATCTGCCC AGTGCCCTGG TGCAGTTTCA GCAGCAACAC
CCGGATGTCA GGCTGGATAT CACCCTGACC GACAAGAAGG TGGATCTGCT GGAGGATGGC
GTCGATGTGG CGCTGCGCAT CGGTCAGCTT ACAAGCTCTT CGCTTATCGC CAAGAAGCTA
ACCCCGATCA AGCTGGTTGT CTGCGCCTCC CCCGAGTATC TGGCCGAGCG CGGTGAGCCC
AAGACCCCGG CGGATCTTAT CCATCACAAC TATCTGCATT TTAGTTATTC GGATCTGGGC
GCGGCCTTCG GTCGTTTCGG CGAGCACTTC TCAGCGCTGA AGATCCCAAG CGATCTGGCC
TGTAACAACG GCGACATGCT GGTGGAGGCC GCCATCGCCG GTCGTGGCAT AGTGGTGCAG
CCTACCTTCT TGGTGAGCAA GGCCCTTCGT AGTGGCAAGC TCAAAGCGAT CCTCACCGAC
TATACCCCAG AGCCTTTCGG CCTGTACGCC GTCTATGTGC ACCGTAAGTT TCTCGCCAGC
AAGGTGCGCT GTTTCGTCGA TGCTTTGAGC CAATACTATG GCAAGACCCC TTACTGGGAT
GCGCTAGACG ACTAG
|
|---|
| Protein sequence | MALDRIDTMK AFTAVVQEGS FTKAADRLGL SSQLVSKYVS QLEEHLKVRL LNRTTRRVNV
TEAGRAYFER CQQVLIDIEE MDNALTNLSE TASGLLKVSA PMSFGIHHLP SALVQFQQQH
PDVRLDITLT DKKVDLLEDG VDVALRIGQL TSSSLIAKKL TPIKLVVCAS PEYLAERGEP
KTPADLIHHN YLHFSYSDLG AAFGRFGEHF SALKIPSDLA CNNGDMLVEA AIAGRGIVVQ
PTFLVSKALR SGKLKAILTD YTPEPFGLYA VYVHRKFLAS KVRCFVDALS QYYGKTPYWD
ALDD
|
|---|
| |