Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2273 |
Symbol | |
ID | 4922628 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 2654978 |
End bp | 2655991 |
Gene Length | 1014 bp |
Protein Length | 337 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640163858 |
Product | transposase IS116/IS110/IS902 family protein |
Protein accession | YP_001094398 |
Protein GI | 127513201 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3547] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.508057 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGTTA CTCTAATTGG TATCGATTTG GCAAAAAATG TTCTTCAGGT TTGCGGTGTC AATCAAGTCG GTAAAACGCT CTTTAATCGC ACCGTTAAAC GCACTCAACT GTTGAAAACG CTCGTTCAGT ATCCAGATGC AGTGATTGCC ATGGAAGCCT GTAGTGGCTC AAATTATTGG GGCCGAGAGC TGTTGTCGCG TGGATTTGAG GTAAAACTTA TCCCACCACA GCATGTGAAG CCCTTCGTGA AAGGCAATAA AAATGACCGC AATGATGCCT TTGCAATCTG TGAGGCTGCG ATGCGCCCCA ACATTATCTT CGTTAAGCCA AGAACCTTAG CGCAGGTCGA TATCATTATT TCCCATCGAA TTCGCGAGCG TCGTATTCGT GTCAGAACCG CGTTGACCAA TCAAATACGT GGATTGTTGA GTGAATACGG CATTGTTATT CCCAAAGGCC GCGACCCGCT CAACCTTGCT CTACCTGAGT TACTCGAAGA TGCCGATAAC TCACTAACCA CCACCGCCCG CAGGTATATC AGAGAGTTAC TTGATGAGCT ATATGCCATC AATGCTTCGA TTAAAGCACT GGAAAAAGAG ATTCGACTAC AGGCAAGAAA TCATGAAGAT ACCAAGCGGT TAACCGCCAT ACGAGGTGTC GCTGAAATTA TTGCTACGGC GTCGGTATCG TTCGCTGGTG ATGGTTCTGG GTATCAAAAT GGGCGACATT TCTCGGCAAA TTTGGGGCTG GTACCGAAAG AATTCTCAAG TGGTGGAAAA CAGAAATTAG GAGCTATCAC CAAGCGGGGA AACAGCTATC TAAGACGACA GCTGATTCAA GGTGCTTGGT CTGTCATACG CTATGCAAAG AATAATGACG ACAGGTTATC TGTCTGGGCA AGAAAGGTCA TTGAACGAAG AGGCAAACAG AAAGCGGCGG TAGCTGTGGC CAACAAACTC GCCAGGATAA TTTGGGCGAT GCTTTACTAC AAAACGGAGT ACAGACCTAG CTAA
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Protein sequence | MKVTLIGIDL AKNVLQVCGV NQVGKTLFNR TVKRTQLLKT LVQYPDAVIA MEACSGSNYW GRELLSRGFE VKLIPPQHVK PFVKGNKNDR NDAFAICEAA MRPNIIFVKP RTLAQVDIII SHRIRERRIR VRTALTNQIR GLLSEYGIVI PKGRDPLNLA LPELLEDADN SLTTTARRYI RELLDELYAI NASIKALEKE IRLQARNHED TKRLTAIRGV AEIIATASVS FAGDGSGYQN GRHFSANLGL VPKEFSSGGK QKLGAITKRG NSYLRRQLIQ GAWSVIRYAK NNDDRLSVWA RKVIERRGKQ KAAVAVANKL ARIIWAMLYY KTEYRPS
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