| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2254 |
|---|
| Symbol | |
|---|
| ID | 4922807 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 2633363 |
|---|
| End bp | 2634814 |
|---|
| Gene Length | 1452 bp |
|---|
| Protein Length | 483 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640163839 |
|---|
| Product | bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase |
|---|
| Protein accession | YP_001094379 |
|---|
| Protein GI | 127513182 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0134] Indole-3-glycerol phosphate synthase
[COG0135] Phosphoribosylanthranilate isomerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0151301 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGCGA GTGTAAACAG TCAAACAGGC CCGTCGAACA CAAGCAGCAA TGTGCTGACC
CGTATCGTCG ACACTAAACC GGCTCACATC GCCGCGCTGA AACAGCGCTT CCCCGAGGCT
TCGCTAGCAC CCAAGGTGTC GGATCGCAGC CTGTATCAGG CACTCAAGGC GCCCAATGCC
GGCTTCATCT TCGAGTGCAA GAAGGCCAGC CCCTCTAAGG GCCTTATCAG GCAAGCGTTC
GATGTCGAGG CTATCGCCGA TGTCTACAAT CATTATGCCG CGGCCATCTC GGTACTGACC
GACGAGCAGT TTTTTCAGGG TGACATGGAT TACCTGCCCA AGGTACGCGC CCGGGTGAGC
CAGCCCATCT TATGCAAAGA TTTCTTCGTC GATCCCTATC AGGTGAAACT GGCGGCCCAC
CAAGGCGCAG ATGCCATACT GCTGATGTTG TCGGTACTGG ATGATGACCA TTATCGCCAG
CTGGCAAGCC TGGCAGCCCA GTACCAGCTG GATGTGCTGA CCGAGGTCAG CAATGAAGAG
GAGCTCAAGC GCGCCATCGC ACTTGACGCC GCCATCATAG GGATCAATAA CCGCAACCTG
AGGGATCTCA CCACAGATCT GGCAACCACA GAGGCGCTTG CCCCGCATAT CCCGGCAGAC
CGCGTGGTAG TGAGCGAATC AGGCATCTAC ACTCAGCAGC AGGTGAGACG CCTGAGCCCC
CTGGTAGATG GCTTCCTGGT AGGCAGCTCG CTGATGGCCG AAGCCGATCT GGATCTTGCC
TGCCGCGCCC TGACCCTTGG CCATAACAAG GTGTGCGGCC TGACCCGCAG CGAAGATGTG
CGCGCCGTCA TTGACGCCGG CGCCCTCTAC GGCGGACTAA TCTTTGCCAA GAAATCGCCT
CGCTACGTGA GCCCAGAGCA GGCACTAGAC TTAGTCGAGC AGCAGCGAAG CAGTGGTAAG
GGGCTGAATT TTGTCGGCGT CTTCGTCAAC GAAGAGCTCT CCACCATCGC CGAGCTGGCC
AAACGTTTAA ACCTGTTTGC GGTGCAACTT CACGGCAGCG AGAGCGAATA CGATATCGAT
CAGCTCAGAT TTAAGCTAAA TGAACTTGAT TGCCAGACCC AGATCTGGAA GGCGGTAGCC
GTCAGCGTCG ATAGCGACGA TTGCCAGGCC CCCTCTACGC CAGCCAATGC CGATCGCCTG
CTCTACGACA GCAAGACAAA GGCGACAGAC GGCGTGCAGT TTGGTGGCAC GGGCCATGCC
TTTAACTGGC AGCAGCAACT GCCGAACAAG GCTGATGCCA TGTTGGCCGG AGGGCTTAAC
GCAGGCAACG CCTTCGACGC CGCCCGGCAG GGCTTCTTCG GCCTGGACTT TAACTCGGGC
CTCGAGTCGG CTCCCGGCGT CAAGGATGCG GAGCTGATCA AGCAAGCCTT TACCGCCCTT
AGAGAATATT AA
|
|---|
| Protein sequence | MQASVNSQTG PSNTSSNVLT RIVDTKPAHI AALKQRFPEA SLAPKVSDRS LYQALKAPNA
GFIFECKKAS PSKGLIRQAF DVEAIADVYN HYAAAISVLT DEQFFQGDMD YLPKVRARVS
QPILCKDFFV DPYQVKLAAH QGADAILLML SVLDDDHYRQ LASLAAQYQL DVLTEVSNEE
ELKRAIALDA AIIGINNRNL RDLTTDLATT EALAPHIPAD RVVVSESGIY TQQQVRRLSP
LVDGFLVGSS LMAEADLDLA CRALTLGHNK VCGLTRSEDV RAVIDAGALY GGLIFAKKSP
RYVSPEQALD LVEQQRSSGK GLNFVGVFVN EELSTIAELA KRLNLFAVQL HGSESEYDID
QLRFKLNELD CQTQIWKAVA VSVDSDDCQA PSTPANADRL LYDSKTKATD GVQFGGTGHA
FNWQQQLPNK ADAMLAGGLN AGNAFDAARQ GFFGLDFNSG LESAPGVKDA ELIKQAFTAL
REY
|
|---|
| |