Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2246 |
Symbol | |
ID | 4922882 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 2625784 |
End bp | 2626665 |
Gene Length | 882 bp |
Protein Length | 293 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640163831 |
Product | pseudouridine synthase |
Protein accession | YP_001094371 |
Protein GI | 127513174 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.0041999 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAGAGTC TACTAATGAG TGAAAAATTG CAGAAAGTCT TGGCCCGTGC AGGCCATGGC TCCCGTCGTG AGATGGAGGC ATGGATTGCT GCAGGTCGAG TTAGTATAGA CGGTGAAATT GCCAAACTTG GTGATCGTAT CGAGGCCGAT GCCAAGGTGC GTATCGATGG TCGTACGGTA TCTATTAAGT CGGAAGACGA CTTGGTGTGC CGTGTGATCG CCTATCACAA GCCTGAAGGG GAGATCTGCA GCCGCAAAGA TCCCGAAGGG CGCCCGACGG TATTCGACCG TCTGCCTAAG ACCCGAGATT CTCGCTGGGT TGCGGTAGGT CGTCTGGATA TCAACACCTC AGGCTTGTTG CTGTTTACCT CTGACGGTGA GCTGGCCAAC CGCCTGATGC ACCCGTCTCA TGAGGTGGAG CGTGAATACG CCGTGCGCAC CTTTGGAGAG GTGACCGATG CCTGCATTCA GCGTCTGCGC AGCGGCGTAA CCTTGGAAGA TGGCCCGGCG CATTTCGATA AGATAAAGCC AGCCGGTGGC GAGGGCATGA ATAAATGGTG GCATGTGTCG CTGGCCGAAG GCCGTAACCG TGAGGTTCGC CGCCTGTGGG AATCACAGGA AGTGCAGGTG AGCCGCCTGA TCCGTATTCG CTACGGCATG ATAGATCTGC CTAAATCCCT GCCTCGAGGT GGTTGGGTCG AGCTGCCAAT TGAGCAGGTG AACTATCTGC GTAAGCTGGC CGGCATGGAT GAGGAGACGC GCACCCTGCT GGGTACAGAC AAACACAGTG TGGCCCGCGC CAAGGTGAAA AGCGCCAAGA TCCGCCGCGC CGTGCGTAAG CACAAGACCA CAGCGGGTAA AACGCCGCGT CAACGCAGCT AA
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Protein sequence | MKSLLMSEKL QKVLARAGHG SRREMEAWIA AGRVSIDGEI AKLGDRIEAD AKVRIDGRTV SIKSEDDLVC RVIAYHKPEG EICSRKDPEG RPTVFDRLPK TRDSRWVAVG RLDINTSGLL LFTSDGELAN RLMHPSHEVE REYAVRTFGE VTDACIQRLR SGVTLEDGPA HFDKIKPAGG EGMNKWWHVS LAEGRNREVR RLWESQEVQV SRLIRIRYGM IDLPKSLPRG GWVELPIEQV NYLRKLAGMD EETRTLLGTD KHSVARAKVK SAKIRRAVRK HKTTAGKTPR QRS
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