Gene Shew_2246 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2246 
Symbol 
ID4922882 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp2625784 
End bp2626665 
Gene Length882 bp 
Protein Length293 aa 
Translation table11 
GC content57% 
IMG OID640163831 
Productpseudouridine synthase 
Protein accessionYP_001094371 
Protein GI127513174 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 
TIGRFAM ID[TIGR00093] pseudouridine synthase 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0041999 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAGAGTC TACTAATGAG TGAAAAATTG CAGAAAGTCT TGGCCCGTGC AGGCCATGGC 
TCCCGTCGTG AGATGGAGGC ATGGATTGCT GCAGGTCGAG TTAGTATAGA CGGTGAAATT
GCCAAACTTG GTGATCGTAT CGAGGCCGAT GCCAAGGTGC GTATCGATGG TCGTACGGTA
TCTATTAAGT CGGAAGACGA CTTGGTGTGC CGTGTGATCG CCTATCACAA GCCTGAAGGG
GAGATCTGCA GCCGCAAAGA TCCCGAAGGG CGCCCGACGG TATTCGACCG TCTGCCTAAG
ACCCGAGATT CTCGCTGGGT TGCGGTAGGT CGTCTGGATA TCAACACCTC AGGCTTGTTG
CTGTTTACCT CTGACGGTGA GCTGGCCAAC CGCCTGATGC ACCCGTCTCA TGAGGTGGAG
CGTGAATACG CCGTGCGCAC CTTTGGAGAG GTGACCGATG CCTGCATTCA GCGTCTGCGC
AGCGGCGTAA CCTTGGAAGA TGGCCCGGCG CATTTCGATA AGATAAAGCC AGCCGGTGGC
GAGGGCATGA ATAAATGGTG GCATGTGTCG CTGGCCGAAG GCCGTAACCG TGAGGTTCGC
CGCCTGTGGG AATCACAGGA AGTGCAGGTG AGCCGCCTGA TCCGTATTCG CTACGGCATG
ATAGATCTGC CTAAATCCCT GCCTCGAGGT GGTTGGGTCG AGCTGCCAAT TGAGCAGGTG
AACTATCTGC GTAAGCTGGC CGGCATGGAT GAGGAGACGC GCACCCTGCT GGGTACAGAC
AAACACAGTG TGGCCCGCGC CAAGGTGAAA AGCGCCAAGA TCCGCCGCGC CGTGCGTAAG
CACAAGACCA CAGCGGGTAA AACGCCGCGT CAACGCAGCT AA
 
Protein sequence
MKSLLMSEKL QKVLARAGHG SRREMEAWIA AGRVSIDGEI AKLGDRIEAD AKVRIDGRTV 
SIKSEDDLVC RVIAYHKPEG EICSRKDPEG RPTVFDRLPK TRDSRWVAVG RLDINTSGLL
LFTSDGELAN RLMHPSHEVE REYAVRTFGE VTDACIQRLR SGVTLEDGPA HFDKIKPAGG
EGMNKWWHVS LAEGRNREVR RLWESQEVQV SRLIRIRYGM IDLPKSLPRG GWVELPIEQV
NYLRKLAGMD EETRTLLGTD KHSVARAKVK SAKIRRAVRK HKTTAGKTPR QRS