| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2226 |
|---|
| Symbol | |
|---|
| ID | 4923222 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 2599683 |
|---|
| End bp | 2602142 |
|---|
| Gene Length | 2460 bp |
|---|
| Protein Length | 819 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640163811 |
|---|
| Product | Ig domain-containing protein |
|---|
| Protein accession | YP_001094351 |
|---|
| Protein GI | 127513154 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00736647 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTCAG CGTTTAAAGT TTTTACCTCA TATTTATTTT TGCTTTTTAT TGTCGCCTGT
AGCGGCGGGG GAAATGTCAC AGATGGTGGT GGCGGTACGC CGACTCCAGG TGAGGACTCT
TATAGTTTGT CGCTTGCGTT AGTTAATGGA AGTGGTGAAC CAACTACTGA CATTTCCAAT
GCTCAACCTG GGAAGTTATA TGCAACCCTA ACTAAAAATA GTTCTCCTTT ATCTGGAGGC
AGAATAGTTT TTTCACTTCA AGGGGAAGGG GTGCTTACTC CTGATAGTGG TGTTAGTGAT
GCTGATGGTA AAGTCTCGAT AGATGTACTT CCTGGAGATA AGTTGGGGTC AGGTAAGATA
ACCGCATCCT ATGAAACTAT AGGCGGTACG ACAGTAGAAG CTTCCGTTTC TTTTAATACT
CAAGGTGATG GCGGCGCAGC AACAGGTGGT GCGCAAGTTG CTCTGATATT AGTTGACGAT
TTAGCCACTA TGACTCCGAT TAGCACTATA TCCTCATTAT CGCCAGGTTA TTTGGTCGCT
ACAGTAACGG GAATTTCCAA AGCAACGATT GTTAAGTTCA CTAGTGATAT TGGCGAACTA
CCTATTGAGA CCGCTGCCAC AGAAGATGGT AAAGCTTATG TACAGATATT AGCTGGTTCT
CAGCCTGGTG CGGGCATTGC CACTGCAACA CTTGTAACGG GGGAAAAGGC TGAATTAGTC
TTTAAAGTTG GGGCGACAAA TGTGTTGATG GGAAGTGGTG ATCCGTTCCA ATCTGAAGTA
GCCGCTGTTT CGCCTGCTGT TGTCTCTGCA GGCGGTACGG CGAGTATCTC TGTTACGCTT
CAAGATGATG CCGGTAATCT TTTTAGCGAG CCGGTTGAAG TTAAGTTTTC ATCTGTTTGT
GCAAATAAAA CACCAGCAGA AGCAGAAATC AGTTCTCCTG TTGTAGCCGT AAATGGTGTA
GCGACCACAA CTTACCTTGC AAAGGGGTGT GTGGGTGACG ATGCTATTAA TGTGAATGCA
GTCGTTGGTA GTAAATCGTT GTCAGCCAAG GCTACACTCA ACGTTTTGTC GGCTAGTGTA
GGAAGTATTA AGTTTGTTGA AGCAATACCT GAACTTATTC GATTAAAGGG AACTGGAGGC
GCTGAATCAT CAACAGTTAA ATTCCAGGTG ATGGATAAGA ATGGTAATCC TGTCAGCAAT
CAAAGGGTGA ATTTTTCGCT TAACTCGGAT ACTGGTGATA TTGTACTTGA TCCGACAACT
GCAACGACTA ACAGCCAAGG TATAGCGCAA ACAGTGGTTA ACTCTGGTAC CGTTGCTACA
TCTGTTAGAG TAACTGCGGT TGTTGACGGC AGTTCACCTG AGATTTCAAG TCAATCTAAT
TTATTGGTTA TATCGACAGG TTTACCGGAT CAGGATAGTT TTTCGCTTTC TGCTGATATT
CTTAACCCCG AAGGTTGGGA TTATGATGGT GTCGAAGTTA ACATAACTGC GCGTTTGGCG
GACGCATTTA ATAACCCTGT ACCTGATGGC ACTGCGGTCT CCTTTACAAC AGAGGGTGGC
GTAATTGATT CATCGTGTAC GACACAGGAT GGTGTATGTT CGGTGAAGTG GAAGAGCCAA
AACCCAAGAC CTACTGGTAA GACACTTTTT GAACTTGGCC AAGAACCTAC GCTGGGAGCC
GACATTGGGC AACCGTATGG CGGACGCGTG ACTATTTTGG CGAGAGCAAT CGGTGAAGAG
TCTTTCCCCG ATCTTAACGG AAATGGTCGT TTCGATTTAG TTGAATTTGA AGACTTTAAA
ACTAAACAGG ACGTATCGGG TAACCCTTAT GATTTAGATG AAGCTTTCGT CGACCATAAT
GAAGATGGAT TATACAATCC AAAGTTCGAT GGCGAAGCTG GTGGTGATGC CGAAACTTTT
GTTGATTTTA ATAATAACAA AGAGTTTGAT GTAGCTGATG GTCTATATAA TGGTAGTTTG
TGCGCCTTAG ATGAAACTGG TGCGCCGCAC GCGGGGTGTT CTTCGGTGAA GAAATCGTTA
GACGTAAGAG CCTCTTTGGT TTTAGTTATG TCAGGAAGCA CTGCCGTAGC GTCCACTCCT
ATTATTGTGG ATAGCTGTAC TGAAGATGCG TCACTTACTG ACGATCCTTG TAAAGGTCTT
AATGGAAACC AAACGATCGA TATCCTGGGC AAGTCAACGG GTGGTGTGTC GATCATTGTC
GGTGATCTTC ACAACCAACC ACTGCCACAG GGAACAGTAA TAACTTTTAC TCCATCAGCA
GGTAGCTTGG CAAGTAAGGG AAGCTATACG GTTACATCAA CCAATGTTAA TAGAGCGGAA
CCTTATAGTG TGACTATTAA AGGTGCCGAT CAACCAGATG CGGGTACGCT TATAATTGAA
GCAACAACGC CTAAGGGTGA TATTAGTGAA TTGGCAAAAA TTCCAATCAC GATTCACTAA
|
|---|
| Protein sequence | MKSAFKVFTS YLFLLFIVAC SGGGNVTDGG GGTPTPGEDS YSLSLALVNG SGEPTTDISN
AQPGKLYATL TKNSSPLSGG RIVFSLQGEG VLTPDSGVSD ADGKVSIDVL PGDKLGSGKI
TASYETIGGT TVEASVSFNT QGDGGAATGG AQVALILVDD LATMTPISTI SSLSPGYLVA
TVTGISKATI VKFTSDIGEL PIETAATEDG KAYVQILAGS QPGAGIATAT LVTGEKAELV
FKVGATNVLM GSGDPFQSEV AAVSPAVVSA GGTASISVTL QDDAGNLFSE PVEVKFSSVC
ANKTPAEAEI SSPVVAVNGV ATTTYLAKGC VGDDAINVNA VVGSKSLSAK ATLNVLSASV
GSIKFVEAIP ELIRLKGTGG AESSTVKFQV MDKNGNPVSN QRVNFSLNSD TGDIVLDPTT
ATTNSQGIAQ TVVNSGTVAT SVRVTAVVDG SSPEISSQSN LLVISTGLPD QDSFSLSADI
LNPEGWDYDG VEVNITARLA DAFNNPVPDG TAVSFTTEGG VIDSSCTTQD GVCSVKWKSQ
NPRPTGKTLF ELGQEPTLGA DIGQPYGGRV TILARAIGEE SFPDLNGNGR FDLVEFEDFK
TKQDVSGNPY DLDEAFVDHN EDGLYNPKFD GEAGGDAETF VDFNNNKEFD VADGLYNGSL
CALDETGAPH AGCSSVKKSL DVRASLVLVM SGSTAVASTP IIVDSCTEDA SLTDDPCKGL
NGNQTIDILG KSTGGVSIIV GDLHNQPLPQ GTVITFTPSA GSLASKGSYT VTSTNVNRAE
PYSVTIKGAD QPDAGTLIIE ATTPKGDISE LAKIPITIH
|
|---|
| |