| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2225 |
|---|
| Symbol | |
|---|
| ID | 4923221 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 2597707 |
|---|
| End bp | 2599044 |
|---|
| Gene Length | 1338 bp |
|---|
| Protein Length | 445 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640163810 |
|---|
| Product | succinylarginine dihydrolase |
|---|
| Protein accession | YP_001094350 |
|---|
| Protein GI | 127513153 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3724] Succinylarginine dihydrolase |
|---|
| TIGRFAM ID | [TIGR03241] succinylarginine dihydrolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00552655 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCATT ACGAAGCGAA TTTTGATGGA CTCGTCGGAC CGACTCATAA TTATGCGGGC
CTGTCATACG GTAATGTGGC TTCTTTAAAT AACGCCGCCG CAATATCCAG CCCTAAGGCG
GCTGCGAAAC AAGGCCTCAA GAAAGCCAAG GCCCTCGCCG ATTTAGGCTT GGCCCAAGGG
ATGCTTGCCC CTCAGGAGCG CCCAGATCTT CACACACTGC GTCGAATTGG TTTTTCTGGT
ACAGATGCCG AAGTATTAAA TAAAGCCGCC AAACAAGCCC CTGCGCTCCT TAGAGCCTGT
TGCAGCGCCT CAAGTATGTG GACGGCCAAT GCGGCAACTG TATCACCAAG CGCCGATACC
CATGATGGCA AGATCCATTT CACCCCGGCA AACCTGGTAG ACAAACTCCA TCGCAGCATT
GAGCCGGTGA CCACAGGTAA CATACTGGCC GCCACCTTTA ATAATTCGCG TTACTTCCAC
CACCATCAAC ACCTGCCTGA ACACGTGAGC TTCGGCGACG AAGGTGCGGC TAACCATACG
CGTCTTTGCA GCGAATACGG TCATGCTGGT ATCGAACTCT TCGTCTACGG TCAGGAGGCT
ACCAACCCTA ACGCACCAAA GCCAAAGAAA TACCCGGCGA GACAGACTCT CGAAGCCTCA
CAAGCCATCG CCCGTCTGCA TCAGCTCGAT GATGAGAGCA GCGTCTTTAT CCAGCAAAAC
CCAGATGTCA TCGACCAAGG CGTGTTCCAC AACGATGTGA TTGCCGTGGG TAACCAGAAT
GTGCTCTTCT ACCACGAGCA GGCCTTTGTC GATACACAAA AGAAACTGGC CGAAATCCAA
GATAAATTCA ACGGTAAAGA GCTTCACTTT ATTGAAGTCC CTACCGCCAA AGTCGGCATT
CAGGATGCAG TAAAGAGCTA TCTATTCAAC ACCCAGATAG TCACCCTACC AAACGGTGAG
ATGGCAATTA TTGCGCCGAC AAACTGTCAG GAAAATGAGG CGGTATATGC CTACCTTAAC
GAACTCGTCA CCTTGGGCAC ACCGATCAAG CAGGTGCACT ATTTCGATGT GAAGCAGAGC
ATGCAAAATG GTGGTGGCCC CGCCTGTCTG CGCCTGCGCG TCGCCATGAA CGAGACCGAG
CTTGCTGCCG TCAACCCCAA CACCTTGATG AATGATGAGC TGTTTAACAG GCTGAACCTC
TGGGTAGAGA AACACTATCG TGATGAGCTC GCCATCGACG ATCTCGCCGA TCCACAGCTC
ATCGTCGAAT CGCGCACCGC GCTGGACGAA CTGACACAGA TCATGAAGCT CGGCAGCGTG
TATCAGTTCC AGAAATAG
|
|---|
| Protein sequence | MKHYEANFDG LVGPTHNYAG LSYGNVASLN NAAAISSPKA AAKQGLKKAK ALADLGLAQG
MLAPQERPDL HTLRRIGFSG TDAEVLNKAA KQAPALLRAC CSASSMWTAN AATVSPSADT
HDGKIHFTPA NLVDKLHRSI EPVTTGNILA ATFNNSRYFH HHQHLPEHVS FGDEGAANHT
RLCSEYGHAG IELFVYGQEA TNPNAPKPKK YPARQTLEAS QAIARLHQLD DESSVFIQQN
PDVIDQGVFH NDVIAVGNQN VLFYHEQAFV DTQKKLAEIQ DKFNGKELHF IEVPTAKVGI
QDAVKSYLFN TQIVTLPNGE MAIIAPTNCQ ENEAVYAYLN ELVTLGTPIK QVHYFDVKQS
MQNGGGPACL RLRVAMNETE LAAVNPNTLM NDELFNRLNL WVEKHYRDEL AIDDLADPQL
IVESRTALDE LTQIMKLGSV YQFQK
|
|---|
| |