| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2209 |
|---|
| Symbol | |
|---|
| ID | 4923030 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 2572977 |
|---|
| End bp | 2576453 |
|---|
| Gene Length | 3477 bp |
|---|
| Protein Length | 1158 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640163794 |
|---|
| Product | peptidase S8/S53 subtilisin kexin sedolisin |
|---|
| Protein accession | YP_001094334 |
|---|
| Protein GI | 127513137 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1404] Subtilisin-like serine proteases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00262816 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.214533 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTACAC CCAAGAAATC ATCTTCCAAG CTGCTCACAA CACTATTAGG TGCCTCACTC
TTAACTGGTT TGAGCCCTGT AGCACTGGCC GTAACCAAGG CGCCGCTGAA GGCAATGCCG
CAGTACGATA ACCAAAGCGT ACTAGTCAAG TTCAAACAGA AAGTCACTAA GAAAGATCGT
AAGGCGCTGA CCCGTAACCT GGGCGTCTCT TTCAAAGATA AGAATAACGA CGGCGTGGAT
GACCGCCTGC GTAACATCGC CAATGGTCGC CTGGCCGTGC TGGATCTGGG CCAGGGTCGC
CAGGTAGAGG CCGTCCTCAA CAGCCTGAAA AACCACCCTT TAGTTGAATA CGCAGAGCCT
AACTACATAG TACACACCAC TGCGGTGCCC AACGATACTT CATATGCAAG CCTTTACGGC
ATGCAGAAAA TCCAAGCTGA AACGGCCTGG GACTATGTGA TCGGTGATTC TTCTGTTGTT
GTTGGTGTGA TCGACACCGG CTTCGACTTC AACCACCCAG ATCTAGCTGA CAACATCTGG
ACCAACCCAA ATGAGATCGC GGGCAACGGT ATCGATGACG ACGGCAACGG CTACATTGAT
GATATCCACG GTATCTCAGC TATCCTGGAT AACGGTAACC CGTCTGATAC AGGTGCTCAT
GGCACTCACG TATCTGGCAC TATCGGTGCC AAAGGTAACA ACGCCCTGGG TGTTGTCGGG
GTAAACTGGC AAACCAACAT GGTCGGCTGT AGCTTCCTCG GTACAGGCGG CGGTACCCTA
GCCGACGGCG TTCAATGTAT CGACTATATG ATCGGTCTTA AAAACGCCGG CAACAACGTC
CGCGTGCTGA ACAACAGCTG GGGTGGCGGT GGCTTCACCC AAACCCTAAA GGATGCCATC
TCGGCGGCCA ACAATGCCGA CATCCTCTTC GTTGCGGCTG CGGGTAACGA TTCTGCAGAC
ATAGACAACG GTGGTTTCTA CCCTGCCGGT TACGATGTGC CTAACGTAGT AGCGGTAGCC
TCTACCGATA GCGCCGACAA CCTGTCTGGT TTCTCTAACT ATGGCGATCA ACTGGTTCAC
CTGGCTGCAC CGGGTTCATT CATCCTGTCA ACGACGCCTA ATAACAGCTA CGACACTTTC
AGCGGTACCT CTATGGCGAC ACCGCACGTA GCCGGCGCCG CAGCGCTGAT CCTGGCCGGT
AACCCGAACC TGACCACGTC TCAGCTAAAA AGTGTACTCA TGAATACTGG TGATGCGCTT
ACCGCTTTGC AAGGTAAAAC CATCTCAGGT AAGCGCCTGA ACCTTGCCAA CGCCCTGATC
GATTCAGGCG GAGCGGGTCC TTCTTTCTTC ATGGAAGCAA CACCAACTAA ATCGACCGTC
AACCAAGGCG ACAGCCAAGC TTATGCTATC GATCTGGTGG CTGCGGGCGG TTTCAATGGC
ACAGCGACTA TGAGTCTGAG CAGCGTACCT GAGCTCAACG CAGACGTGGT ATTTGCTCAA
AACCCAGTTG CGGGCGACAC CACTAACACA ATGACGATCA ATACGACCGA GCAAACTGCG
CCAGGTACGT ACAACATGAC GGTCAACGCC ACCGACGGCA GCGTTTCTAA AAACATCAAC
CTGGAGCTGA AAGTATGGCC TCAAGGTACT GTTTCTACTA TGTTGACCAG CAACCAAGTC
GTGCCTATCA GCGATAACGA TCCTTCATTC CCTGCAACCA GCAGCATCAA TGTTCCATAC
GACATGACGC TGACTCAGGT TGAAGTATTT GTTGACATCA CCCACGCTTG GGCACCTGAC
ATGCTTGTGT CTGTCATTTC ACCAGCCGGC GAAGAAGTCA TTCTGCACGA CCGTGCGGGC
GGCAATGGTA CAGGCCTTGT TGGCAACTTT ATTCCTACCG AATACGAGCT GGACAACGCA
TTGGGTGAGT GGACACTGAA AGTTGTTGAC GAAGTTGCGG GCGACACGGG CGCTATCAAC
AGCTGGTCGC TAAAACTGAC TGGCGCACCA TCGGCAGGCA CGGACTTCGT ACCAAACGTA
CAGATAGCGA CGCCTGCTAA CCAAGGCGCG TACCTGACCG GTGAAACCGT CAGCTTCAGT
GCAAGCTCAA ACGACACCGA AGACGGCGAC CTGACGTCTG GCATCGTTTG GACCTCAAGC
ATCGACGGCG TGATCGGTAA CGGCGCATCG TTCACTAAGT CTAACCTGTC GGTAGGCGAC
CACGTGATCA CCGCGACCTC TACTGATTCA GCGGGCCAGG CTAGCACAGA AACTGTTGAG
CTATCTGTTG CCGATGCTAA CACTACAGTA AGCGGTGCTA ATAGCACGGC AATCGCGATG
CCTGAGATGG GCGGCAAGGT ATTCACTGAA ATCGACCTAC CTACCGGCGT TGCTATCGAT
GCAATCGAAG TCAATGTCGA TATCTCGTTC GAATCGGTTC AATACCTGAA CGTGTGGCTA
CAGTCTCCGT CTGGCACCCT AGTTAAACTG GTGACTTGGC GTCAGTTCTG GAACAAAGAC
CTGGTTAAGA CCTTCAACCC GGTTGAATTC GCAGGCGAGT CGAGCATGGG TACATGGCGC
CTGTTTGTAG AAGATACCTC TAGCTACATC ATGAATGGCG TACTGAACAA CTGGAGCATC
TCGGTATCTA ACGGTGATGC GGTACTTCCA CCTCCTGCCG AAAACACAGC GCCTGAATTG
ACTATCACTG CACCTACTGG TGGCACTAGC TTCAACCTAG GCGACAGCAT CACCTTCGAA
GGCAGCGCAA TTGACGCAGA AGAAGGTAAC ATCAGTTCAC GTATCGACTG GTACTCAAAC
CTCAACGGTA AGATTGGTAC TGGCGGTCTA TTCAGCACTA ACTCACTAAG CGTTGGCGAC
CACATAGTGA CAGCGGTTGC GTGGGACAAT GATGAAGCAT TCGACCAGAA GCAAGTATCT
CTAACTGTTG TGGACGCTCC GGCTAACGAA GCGCCAGTGG CTGACTTCAG CTTCGCTGCT
GAGTTCTTGA ACGTACAGTT CTCTGACCTA TCAGGTGACA CTGACGGTGC GGTCACTACT
CACTCTTGGG ATTTCGGCGA CGGTGCAAGC TCAACGCTAG CTAACCCTTC ACACAGCTAC
GCAGCTGCGG GTACTTACAC TGTTACCCTA ACTGTAAGCG ATGATGACGG CGCCGAGCAC
TCAGTCACTA AAGAAGTAAC TGTAACTGAG CCATCTATCG TACTAGAAGG CAGCGCAAGC
AGTGATGGTA GCCGTGTGGT AGCAAGCTTG TCTTGGACTT CGAAGAATAA GGTAAACTTC
GATGTATACC GCGACGGTGC CCTAGTAAGC TCTGGTGTAA GAAAAACAAG CTACACAGAT
CGCTTCAGCT CTAACGCTAC TAGCTTCACT TACCAAGTAT GTGAAACTGG CACAAGCACC
TGTTCTTTAG AGGAAACCAT TGTGGCTACT CCTAAGACTA AAGGTAGAAA CAAGTAA
|
|---|
| Protein sequence | MTTPKKSSSK LLTTLLGASL LTGLSPVALA VTKAPLKAMP QYDNQSVLVK FKQKVTKKDR
KALTRNLGVS FKDKNNDGVD DRLRNIANGR LAVLDLGQGR QVEAVLNSLK NHPLVEYAEP
NYIVHTTAVP NDTSYASLYG MQKIQAETAW DYVIGDSSVV VGVIDTGFDF NHPDLADNIW
TNPNEIAGNG IDDDGNGYID DIHGISAILD NGNPSDTGAH GTHVSGTIGA KGNNALGVVG
VNWQTNMVGC SFLGTGGGTL ADGVQCIDYM IGLKNAGNNV RVLNNSWGGG GFTQTLKDAI
SAANNADILF VAAAGNDSAD IDNGGFYPAG YDVPNVVAVA STDSADNLSG FSNYGDQLVH
LAAPGSFILS TTPNNSYDTF SGTSMATPHV AGAAALILAG NPNLTTSQLK SVLMNTGDAL
TALQGKTISG KRLNLANALI DSGGAGPSFF MEATPTKSTV NQGDSQAYAI DLVAAGGFNG
TATMSLSSVP ELNADVVFAQ NPVAGDTTNT MTINTTEQTA PGTYNMTVNA TDGSVSKNIN
LELKVWPQGT VSTMLTSNQV VPISDNDPSF PATSSINVPY DMTLTQVEVF VDITHAWAPD
MLVSVISPAG EEVILHDRAG GNGTGLVGNF IPTEYELDNA LGEWTLKVVD EVAGDTGAIN
SWSLKLTGAP SAGTDFVPNV QIATPANQGA YLTGETVSFS ASSNDTEDGD LTSGIVWTSS
IDGVIGNGAS FTKSNLSVGD HVITATSTDS AGQASTETVE LSVADANTTV SGANSTAIAM
PEMGGKVFTE IDLPTGVAID AIEVNVDISF ESVQYLNVWL QSPSGTLVKL VTWRQFWNKD
LVKTFNPVEF AGESSMGTWR LFVEDTSSYI MNGVLNNWSI SVSNGDAVLP PPAENTAPEL
TITAPTGGTS FNLGDSITFE GSAIDAEEGN ISSRIDWYSN LNGKIGTGGL FSTNSLSVGD
HIVTAVAWDN DEAFDQKQVS LTVVDAPANE APVADFSFAA EFLNVQFSDL SGDTDGAVTT
HSWDFGDGAS STLANPSHSY AAAGTYTVTL TVSDDDGAEH SVTKEVTVTE PSIVLEGSAS
SDGSRVVASL SWTSKNKVNF DVYRDGALVS SGVRKTSYTD RFSSNATSFT YQVCETGTST
CSLEETIVAT PKTKGRNK
|
|---|
| |