| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2196 |
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| Symbol | |
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| ID | 4923110 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2555180 |
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| End bp | 2557105 |
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| Gene Length | 1926 bp |
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| Protein Length | 641 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640163781 |
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| Product | helicase c2 |
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| Protein accession | YP_001094321 |
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| Protein GI | 127513124 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1199] Rad3-related DNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00456377 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGAATATAC GACTGACCCA AGATGTACAG CAGGTATTCG CCCCAGATGG CAGCTTAAGC
CGTCATATCA AGGGCTATAG CTGTCGTGTC CAGCAGCAGA CGATGGCGAC TCGGGTGAGC
GAGACCCTGC AAAAGGGCGA CAACCTGGTG GTCGAGGCAG GCACCGGCGT GGGCAAGACC
TACGCCTATC TGGTGCCGGC GCTGCTCAGC GGTAAGCAGG TCATCGTCAG CACCGGCAGT
AAAAACCTGC AGGAGCAGTT GTTTTTCAAA GATCTGCCCG CACTGCTCAA CATCTTAGGG
ATCAGGCCAA AAGTGGCTCT GCTCAAGGGG CGCAGCAACT ACCTGTGCCA ATACCTGATG
GAGAAGCAGC TCAGCGGCGT CGAGGTGAAC GATGGCAAGA TCCTCGATGA CCTGCTGCGA
ATCGATCAGT GGGCCAGCCA GACGGTGGAT GGCGACATCG GCAGTCTCTA CGCCGTGCCG
GAAAACTCCC CGGCGATCCC GCTGGTGGTG AGCAGTAAAG AGTCCTGCAT TGGCAAGGCC
TGCGATCACT ATGAGGCCTG CTTTACCCGT AAGGCCCGCG CCAAGGCGCT CGATGCCAAA
ATCATAGTGG TCAACCATCA CCTGTTTTTC GCCGATCGCA TCCTAAAAGA GACGGGATTT
GCCGAGCTGT TACCCGACAG CGACGTGGTG ATCTTCGATG AGGCGCATCT GCTGCCAGAT
ATCGCCGTGA CCTATTTCGG CCAGCAGCTC AGCATCAAGA GCCTCATCCG CCTGCTGGAA
CGTTTTAACG AACTCTATCG CACTCAGATG GCAGATTCGC CGCAGATTGG CGCCATGACG
GCCCGCTGCC ATACTCAGCT GCTCCATTGG CAGGGACTGC TGTTTGCCAC CGAGGAGCGT
GACTGGCGAA GGCTTATCGG CGACAAGGCC TTGATGGAGG CATCATGGGC ACTGGTGTCC
GAGCTGACCG CCTATCGCAC CATGCTGCTG GGCTATCTTG GCCGCAACGA GGCGTTCGAT
GATGGCGTCG AAAAAATCGA TGGGCTGCTC AGCAAGTTAA CCGTGTTTAT TCAATGCGAT
AACCCAGATA GCGCCTACAG CATAGACTAT GGTTATCAGC ACCTGACCTT GAGGATCTCG
CCCATCAAGG TGGCCAAAGA GTGTCAGTCG CTGTTTAGCC CGGATGTCAG CTGGATCTTT
ACCTCGGCCA CTTTGCAGAT CAATCGCGAC CTGTCGCTGT TTACCAAGGC GATGGGGCTG
GAGAAGGCCA ACACGAGTAT ATTAGACAGC CCCTTCGACT ATCGGCGCCA ATCTCTGTTC
TGTGTGCCGC GCCATCTGGC GTCGGTCACC AGTCAGGAGC GCGCCGCCAG GCAGCTGGTG
GAGGTGGCGG TGAAGGCGAT AAATGCCGCC AAGGGGCGTA CCTTCATGCT GTTTACTAGC
CATCGCATGC TCAATCTGGT GGCTGTGATG TTACAGGGGC GGATCGATTA TCCGCTTCTG
GTGCAGGGAC AGGCGGGCAA GCAGACTTTA CTTAAGAAGT ACCGACAGCT GGGTAACGCC
GTGTTGCTGG GCACGGGTGC CTTCTGGGAG GGGGTGGATG TACGCGGTAA GCTGCTGAGC
TGCGTCATCA TCGACAAGCT GCCCTTCGTC TCGCCGGACG ATAACCTCTA CAAGGCCAGG
GCTGACGGGG TGCAGCGTGA GGGCAAAGAT CCCTTCATGA CCCTGTCGCT GCCCCAGGCG
GTGATAGCGC TTAACCAGGG CGTCGGCCGC CTGATTCGTG ATGAGAAAGA CAGGGGCGTG
TTGATCCTGT GCGACAATCG CATCGTCAAT CGCCCCTATG GTCAGGCCTT TATCAACTCG
CTGCCGCCCA TGCATCGCAC CCGGGATCTC GACAGTGCGG TGCATTTCCT GCAAACCATA
GACTAG
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| Protein sequence | MNIRLTQDVQ QVFAPDGSLS RHIKGYSCRV QQQTMATRVS ETLQKGDNLV VEAGTGVGKT
YAYLVPALLS GKQVIVSTGS KNLQEQLFFK DLPALLNILG IRPKVALLKG RSNYLCQYLM
EKQLSGVEVN DGKILDDLLR IDQWASQTVD GDIGSLYAVP ENSPAIPLVV SSKESCIGKA
CDHYEACFTR KARAKALDAK IIVVNHHLFF ADRILKETGF AELLPDSDVV IFDEAHLLPD
IAVTYFGQQL SIKSLIRLLE RFNELYRTQM ADSPQIGAMT ARCHTQLLHW QGLLFATEER
DWRRLIGDKA LMEASWALVS ELTAYRTMLL GYLGRNEAFD DGVEKIDGLL SKLTVFIQCD
NPDSAYSIDY GYQHLTLRIS PIKVAKECQS LFSPDVSWIF TSATLQINRD LSLFTKAMGL
EKANTSILDS PFDYRRQSLF CVPRHLASVT SQERAARQLV EVAVKAINAA KGRTFMLFTS
HRMLNLVAVM LQGRIDYPLL VQGQAGKQTL LKKYRQLGNA VLLGTGAFWE GVDVRGKLLS
CVIIDKLPFV SPDDNLYKAR ADGVQREGKD PFMTLSLPQA VIALNQGVGR LIRDEKDRGV
LILCDNRIVN RPYGQAFINS LPPMHRTRDL DSAVHFLQTI D
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