| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2195 |
|---|
| Symbol | |
|---|
| ID | 4923109 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 2553866 |
|---|
| End bp | 2555167 |
|---|
| Gene Length | 1302 bp |
|---|
| Protein Length | 433 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640163780 |
|---|
| Product | NADH dehydrogenase |
|---|
| Protein accession | YP_001094320 |
|---|
| Protein GI | 127513123 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1252] NADH dehydrogenase, FAD-containing subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00383312 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGCAA AGATCCCAAG AATCGTGATA GTGGGCGGCG GTGCCGGCGG ACTCGGCCTA
GCCACCCAAC TGGGACACAA GTTAGGCAAG AAGCAGCGGG CAGAGATCCT ACTGATAGAC
AAAAACCGCA CTCATATCTG GAAGCCCTTG CTCCATGAGG TGGCCACCGG CTCCCTCGAT
GCCGACCTCG ACGGCGTGGT CTACTCCGCC CATGCGGTGA AACATGGCTA CCAGTTTCAA
TTGGGGGAAC TCACTGGGCT GGACCTTAAG GGCAAACGAT TACAGCTCGG CGCCATCAGC
AACGATAAGA GCGAAGCGCT ACTGCCCGCC AGAGAACTAG AGTACGACAC CTTAGTGCTA
GCGGTTGGCA GCGTCAGCAA CGATTTTGGC ACCCCGGGCG TGAAGGAGCA CTGCTTCTTT
CTCGACTCCC ACCACCAGGC GAACCGTTTT CATAACGCCC TGCTCGACAG CTTCACCCGC
ATGCATCAAT CGGAGGAGCA GCAAAAGCTC AATATCGCCA TCGTCGGCGG CGGCGCGACT
GGGGTAGAGC TGTCCGCCGA ACTCTACCAT GTGACCGATC TGCTCAAGAG TTATGGCCTG
AATAAGATGA CCGCCGACAG GCTGAGTATC ACACTGATCG AGGCGGGCCC GCGCATCTTA
CCCGCCCTGC CCGAACGTAT CGCCGCCTCG GCCACCCGCG AGCTGATTAA ACTGGGCGTG
TCGGTACGCC AGAGCACCCG CATCGAAGAG GCGACCTCTA AGGGCTTTGT CACTGCAGGC
GGCGAGTTGA TCGCCGCCAA CCTGATGTTG TGGGCGGCCG GGGTCAAGGC GCCTGATTTT
ATCAAGCAGA TAGAGGGACT TAACCTCAAC CGCGCCAATC AGATATTGGT GCGTCCTACC
CTACAGGCCC AGGGGCATGA CGATCTCTAT GTGATCGGCG ATTGCTGCGC CTGTGAGCAG
GCCGATGGCA GCTTCGTGCC GCCAAGGGCG CAATCGGCGC ACCAGATGGC CCAGTGTGTC
GAGCACAATA TTCTCAACGA GCTCAGAGGC CTGGGTCTCA CCGAGTATGA GTATGTGGAT
CACGGCTCCC TGGTCAATCT GTCACGTTTT AGTACCGTCG GTAGCCTGAT GGGTAACCTC
ACTAAAGACA GCATGTTTGT CGAGGGAAAG ATCGCCCGCT TCATGTATAT CTCCCTCTAC
CGCATGCACC AAAAAGCAAT TCACGGCCTG GCCAAGACCA TCGCCCTCTG GTTGGTGGAG
AAGATGATGC GAGTGGTGCG CCCGCGAATG AAGCTGCACT AA
|
|---|
| Protein sequence | MSAKIPRIVI VGGGAGGLGL ATQLGHKLGK KQRAEILLID KNRTHIWKPL LHEVATGSLD
ADLDGVVYSA HAVKHGYQFQ LGELTGLDLK GKRLQLGAIS NDKSEALLPA RELEYDTLVL
AVGSVSNDFG TPGVKEHCFF LDSHHQANRF HNALLDSFTR MHQSEEQQKL NIAIVGGGAT
GVELSAELYH VTDLLKSYGL NKMTADRLSI TLIEAGPRIL PALPERIAAS ATRELIKLGV
SVRQSTRIEE ATSKGFVTAG GELIAANLML WAAGVKAPDF IKQIEGLNLN RANQILVRPT
LQAQGHDDLY VIGDCCACEQ ADGSFVPPRA QSAHQMAQCV EHNILNELRG LGLTEYEYVD
HGSLVNLSRF STVGSLMGNL TKDSMFVEGK IARFMYISLY RMHQKAIHGL AKTIALWLVE
KMMRVVRPRM KLH
|
|---|
| |