| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2187 |
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| Symbol | |
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| ID | 4923286 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2545541 |
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| End bp | 2546647 |
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| Gene Length | 1107 bp |
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| Protein Length | 368 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640163772 |
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| Product | ribonuclease D |
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| Protein accession | YP_001094312 |
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| Protein GI | 127513115 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0349] Ribonuclease D |
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| TIGRFAM ID | [TIGR01388] ribonuclease D |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000120269 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000305333 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGACCTTTC AATATGTAGA GGATGATGCC AGCCTAACAG AGTTGGTGGA CAAGTATCGT
CAGGCTAAGG TCCTGATGTT GGATACTGAA TTCGTTCGCA CCCGCACCTA TTACGCCAAG
CTGGGACTGA TCCAGGTCTA TGACGGCGAG ACCCTGGCGC TGATCGATCC TGTTGCGGTA
AGCGATCTCT CTGCATTTTG GGCCCTGCTG GAGCGCGACG ATATGATAAG CGTGCTGCAC
TCTTGCAGCG AAGATCTCGA AGTCTTGGCT CGCTACGGTC GCTGTCAGCC TAAGGTGCTG
TTCGACAGCC AGATCGCCGC CGCCTTCTGT GGTTGGGGTC ATGGCATGGG CTACGCCAAG
CTGGTGGAGC ACTGCCTGGG CGTGCAGCTG GATAAGGGCG AGTCGCGCAC CGACTGGATG
AAACGTCCGC TCAGCGATGC CCAGCTGCAG TATGCGGCCA ACGATGTGGA TTATCTCTAT
CGGCTCTATC CTCAGCTGCT AGAAAAGCTG CAAGAGTCTG GCAGAATGCC TTGGCTGCTC
GAAGAGGGTG AGCGCATGAC CCAGGGGCGT CTGGAGAGCC CGGATGGGGA CACCGCCTAC
CTCAAGGTGA AGAACGCCTT CCAGCTAAGC CCTAAGCAGC TGGCCTATCT GAAGGTGCTG
GCCAAGTGGC GGTTGCAAAA GGCGCTGGAC AGAGACTTAG CCCTGGGCTT CGTCATCAAA
GATCACGCGC TGCTGGCGCT GGCCAAGAAG CAGCCTAAGA GTACGGGTGA GATCTTCAGG
ATGACAGAGC TGACCGAGCA GGAGAAGCGC CTGCATGCCA AGGCGATCAT CGCCGAGATG
GCCAAGGCGG ATCTGGATAA CCTGCCCGAG GCTATCGATG TGATCGCCCT GAAACCCGGC
TATAAGTCGG CCTTTAAGGC GATCAAACAG GCGCTAACCC AGGTGGCGGA AACCCATCAG
GTGCCGATGG AGCTGCTGGG CTCTAAGCGT CATATTCATG AGTACCTTCA ATGGCGCTGG
AACGATGGCC AGGGCGAGAT GCCCTTGGTG TTACAGGGCT GGCGCGGTGA GCTGAGTAAG
GACGCCTTGG CCGAGATAAG CTGCTAA
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| Protein sequence | MTFQYVEDDA SLTELVDKYR QAKVLMLDTE FVRTRTYYAK LGLIQVYDGE TLALIDPVAV
SDLSAFWALL ERDDMISVLH SCSEDLEVLA RYGRCQPKVL FDSQIAAAFC GWGHGMGYAK
LVEHCLGVQL DKGESRTDWM KRPLSDAQLQ YAANDVDYLY RLYPQLLEKL QESGRMPWLL
EEGERMTQGR LESPDGDTAY LKVKNAFQLS PKQLAYLKVL AKWRLQKALD RDLALGFVIK
DHALLALAKK QPKSTGEIFR MTELTEQEKR LHAKAIIAEM AKADLDNLPE AIDVIALKPG
YKSAFKAIKQ ALTQVAETHQ VPMELLGSKR HIHEYLQWRW NDGQGEMPLV LQGWRGELSK
DALAEISC
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