| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2182 |
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| Symbol | |
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| ID | 4923281 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2541987 |
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| End bp | 2542976 |
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| Gene Length | 990 bp |
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| Protein Length | 329 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640163767 |
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| Product | putative transglycosylase |
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| Protein accession | YP_001094307 |
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| Protein GI | 127513110 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2951] Membrane-bound lytic murein transglycosylase B |
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| TIGRFAM ID | [TIGR02283] lytic murein transglycosylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00884137 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000305333 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTTTTGA AGAATGTTTT GCTAAGTGCT CTACTTGCAA ATGGCTTGCT TTTGACCAGC
CCCTTGCAAG CCCAAGAGTC AGCGCTCAGT TACGATCAAT ATCTCTCTGA GTTAAAGCAG
CAAGCAGTCG AGCAGGGGAT CGCCCAAGGC ACCATAGACG CGGTTTTCGA TCAGATAAAG
CTGTTCAAGA AGGCGATGGT TAACGAACCC GCCGCCAATG GCCCGCAAAA TGGCCCACAA
AATCTGGATA CCTATCTCCC AGAGCGGGTC AGCGAAGCCT TGGTTGAGCA GGCGAGAGGC
CTGTATCGCG ATAACAAGGC GCTTTTCGAT CGTCTAGGTA AGGAATATGG CGTCCAGCCA
AGGTTTATAC TGGCCTACTG GGGCATAGCC TCGGCCTTCG ATGCCAGCGA CTATCCGGCG
CTGACGGTGA TCGCCTCCAA CGCCTATCAT AGCGATGGCC AGGATGCGGC GTTTCTCGCG
GCGCTCAAGC TGATGGAGCG TGACCAACTT AGCTTCGACA GCCTCAAGAG CGATGCCTCC
GGCCTGATGG GCTACCCCCA CTTTACCCCC AAGCAACTGG CCAAATACGG CAAAGATGGT
AATGGCGACG GTAAGGTGGA TATCTGGCAG AACCTCGCCG ATGCCTTCGC CACCACGGCA
AATTATCTTA AGCAGCTCGG CTGGGATTAT GATGGCACCT GGGGACGCCA GGTGAAATCC
CCTAGCGAAC TGCCCAAGGA TCTGGTGGGG CTAGAGGTAC ACAAAGGCTT TGACCAGTGG
CAGGCGCTTG GCGTAAGGCG CTTCAATGGC AGCGACCTGC CATCACGCAA AGACATGCAG
GTGTCGCTGA TAAGGCCCGA TGGCAAAGGC GGTCGCAGCT ATCTGGTGTA TGACAACTAC
CGAGTACTGC GACAGACCCA GGCGTCGGAT CATCTGACCC TGGCTGTGAC CTACCTGTCA
GAAAGAATTA AGTATCCTGA GATAAAATAG
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| Protein sequence | MFLKNVLLSA LLANGLLLTS PLQAQESALS YDQYLSELKQ QAVEQGIAQG TIDAVFDQIK
LFKKAMVNEP AANGPQNGPQ NLDTYLPERV SEALVEQARG LYRDNKALFD RLGKEYGVQP
RFILAYWGIA SAFDASDYPA LTVIASNAYH SDGQDAAFLA ALKLMERDQL SFDSLKSDAS
GLMGYPHFTP KQLAKYGKDG NGDGKVDIWQ NLADAFATTA NYLKQLGWDY DGTWGRQVKS
PSELPKDLVG LEVHKGFDQW QALGVRRFNG SDLPSRKDMQ VSLIRPDGKG GRSYLVYDNY
RVLRQTQASD HLTLAVTYLS ERIKYPEIK
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