| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2175 |
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| Symbol | nhaB |
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| ID | 4923350 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2534567 |
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| End bp | 2536162 |
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| Gene Length | 1596 bp |
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| Protein Length | 531 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640163760 |
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| Product | sodium/proton antiporter |
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| Protein accession | YP_001094300 |
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| Protein GI | 127513103 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3067] Na+/H+ antiporter |
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| TIGRFAM ID | [TIGR00774] Na+/H+ antiporter NhaB |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000136342 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0115207 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTGTGA CCATGAGTCA GGCGTTTATT GACAATTTCT TAGGAAATTC TCCTAAGTGG
TTCAAAATCG CAATTTTATC ATTCTTAGTG ATCAACCCGA TCGTCTTCTA CCTCAACCCA
TTCGTCGCCG GATGGTTACT GGTAGTCGAG TTCATCTTCA CGCTGGCAAT GGCGCTGAAA
TGTTATCCCC TACAACCCGG TGGTCTGCTG GCCATCGAAG CCGTCATCAT AGGCATGACC
TCGCCTAGTC AGGTGCTACA TGAGATAGAA GCCAACCTTG AGGTACTACT GCTATTGATC
TTCATGGTGG CCGGCATCTA CTTCATGAAA CAGCTGCTGC TGTTCGTGTT CACCAAGATG
ATCACCAAGA TCCGCTCTAA GGTAGTGGTC TCCTTGATGT TCTGTATCGC CTCGGCCTTC
CTGTCTGCCT TCCTCGATGC GCTGACGGTA ATCGCCGTTA TCATCGCCGT GGCCGTAGGT
TTCTACTCCA TCTACCACAA GGTGGCCTCT GGCAAAAGTT TTACCGACGA TCATGACCAC
ACCTCGGACA GCCATGGTGA AGGGCATTCC CTGTGTGAAG ATGAGCTGGA GGCGTTTCGT
GGCTTCCTGC GTAACCTGCT GATGCATGCC GGTATTGGTA CCGCATTGGG TGGTGTGTGC
ACCATGGTGG GTGAGCCGCA AAACCTGATC ATCGCCGCCC AGGCCAACTG GCAGTTCGGT
GAGTTTGCCC TGCGCATGGG CCCGGTCACA GTGCCTGTGT TCATCTCGGG TATCGCCACC
TGTTTCCTGG TGGAGAAGTT TAAGTGGTTT GGCTATGGCC AACAGCTACC AGAGGCGGTA
CACAAGATCC TGTCCGATTA CGCCTCTTAT GAAGATGCGC ACCGCACCAA GCATGACAAG
ATCAAGCTGG TTATCCAGGC GTTTGTGGGT GTATGGCTGA TCGTCGGCCT GGCCTTCCAC
CTGGCCTCAG TGGGTCTTAT CGGTCTGTCG GTGATCATCC TGACCACCGC CTTTAACGGC
GTCACTAACG AGCACGCCCT GGGCAAGGCC TTCGAAGAGG CACTGCCCTT CACCGCGCTG
CTGGCAGTCT TCTTCGCCAT CGTGGGCGTG ATCATCGACC AGCAACTGTT CGCCCCTGTG
ATCCAGTGGG CACTGAGCTA CGAGGGTAAC ACTCAGCTGG TGATCTTCTA TATCGCCAAC
GGCCTACTCT CTATGGTGAG TGATAACGTG TTCGTGGGTA CCGTCTATAT CAACGAGGTG
AAAGCCGCGC TGTTAGATGG CCAGATCACC CGCGATCAGT TCGACCTGCT GGCGGTGGCC
ATCAACACGG GTACCAACCT GCCATCTGTG GCAACCCCTA ACGGTCAGGC AGCCTTCCTG
TTCCTGCTGA CCTCGGCGAT TGCCCCATTG ATCAGGCTCT CCTACGGTCG CATGGTGTGG
ATGGCGCTGC CCTACACTAT CGTCTTGTCT ATCGTGGGCA TCCTAGCCAT CGAGACAGGA
TTCCTGGGCG AGATGACCCA ATACTTCTAC GATTCCCATA TGCTGATCCA CCACTCGGTG
GCGGAAGCGG CCAAGGGCGC AGTCACCGGA CACTAA
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| Protein sequence | MPVTMSQAFI DNFLGNSPKW FKIAILSFLV INPIVFYLNP FVAGWLLVVE FIFTLAMALK
CYPLQPGGLL AIEAVIIGMT SPSQVLHEIE ANLEVLLLLI FMVAGIYFMK QLLLFVFTKM
ITKIRSKVVV SLMFCIASAF LSAFLDALTV IAVIIAVAVG FYSIYHKVAS GKSFTDDHDH
TSDSHGEGHS LCEDELEAFR GFLRNLLMHA GIGTALGGVC TMVGEPQNLI IAAQANWQFG
EFALRMGPVT VPVFISGIAT CFLVEKFKWF GYGQQLPEAV HKILSDYASY EDAHRTKHDK
IKLVIQAFVG VWLIVGLAFH LASVGLIGLS VIILTTAFNG VTNEHALGKA FEEALPFTAL
LAVFFAIVGV IIDQQLFAPV IQWALSYEGN TQLVIFYIAN GLLSMVSDNV FVGTVYINEV
KAALLDGQIT RDQFDLLAVA INTGTNLPSV ATPNGQAAFL FLLTSAIAPL IRLSYGRMVW
MALPYTIVLS IVGILAIETG FLGEMTQYFY DSHMLIHHSV AEAAKGAVTG H
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