| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2172 |
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| Symbol | |
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| ID | 4923347 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2527611 |
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| End bp | 2529521 |
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| Gene Length | 1911 bp |
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| Protein Length | 636 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640163757 |
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| Product | surface antigen (D15) |
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| Protein accession | YP_001094297 |
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| Protein GI | 127513100 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0729] Outer membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0587871 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGCCTCTA TAATCTGCGA CAATAAACAG CAACAAACTT TTCAACTAGA TAGAGCCTTT
TTCTTGCGGA TCTTTGCGAC CTTATCCCGG CTATCGATAC TCGCCCTACT CAGCTTCAGC
ATGGGTATCT CCCCCGTCTG GGCAAACGAC TGGTTAAAGG TCGAAGTCGA CGGCGCGAAT
GAGTCGCTTA AACGCAACAT CACCGCCCAC CTCGGCGCGC TGCCAGGCTC AGAGGTGCAG
CGCCGTGCCT ATATCTTCAA CGCCGAAGAG AACATAGAGG CCGCGCTTCA CTCCCTTGGC
TATTACAAGG GCAAGATAGA CCAGCAGCTG GAGAGCCCGG AATCCGGCCC CTGGACGCTC
CGCCTCACCG TCACCCCGGG CGCCCCGACG GTGATCCAGT GGATAGATAT TCAGCTCTCG
GGTGAGATCC TCGATGATGA GGTGATAAAC GCCTGGCTAA GGCAGATAAA GGTTAAACCC
GGTGACGTGC TCAATCATGG CGAATATGAG GCGATCAAGT CGCAGCTACT CACCTACGCC
TTGGCCAGAG GTTACTTCGA GGGCAAATAT CTGACCAATA AGATAGTGGT CAACCGGGAT
CTCGACAGCG CGCAGATCAG CCTGCACTAC GACTCGGGCC CGCGCTATCG CATCGGCGAA
GTCAGCTTCA ATGGTCACGA CCTGGTGCCC GGCTTTCTCG ACAAGCTGAT CCCCTTTGAG
CCAGATTCCC ACTACAGCAC GGGTAAGATA GGCGCCCTCA ATCGTGAGCT GGTAGATACC
GGCTACTTCA CCAATATCAA GGTGCTGCCG CAGCTGGACA AGATGCAGGA TGACAGGGTG
CCGATTCGGG TAGAGGTAAC GCCTAAACCC AGCCACTCCA TCGAGCTGGG TCTGGGCGCC
GACATAGGCA ACTCCATCGA CAACAACATA GAGCCTAGGG TCAGAGTCAC CTGGCGCACG
CCGCAGATCA ATCGCTATGG CCACTCCCAG GAGACCAGTC TGGAATGGTC GCCGGACAGG
CCTAAGTTTC TGACCACCTA TACCATTCCC CTCACCCATC CGCTGGACGA TCAGCTCAAG
CTACGTCTCG GCCTGCTGAG GGACAAATAT GGGGTGACCC AGATCTACGA TCCCGATAAG
CGCGACTATC GCAACACAGG TGAGCTGGAG TCGGTCAAGA AACTCGTGGG TGTCGTCAGG
CAAAAACGCC TGCATAATCA ATGGCTGTTT ACCTATTCGT TAGATGCCAT CAACGAAGAG
TATACCCAGT CGGATATCAA ATATAATCCC GACATCTTGC TGCTCGGCAC CAGCCTGTCC
AAGACCAACA GGGGCGATAA GAGTCTGGAT CCCAAGTCGG GCTTCTTCCA GTATTACAGC
CTGGAGCATG CCGACCCGAG TCTTGGCTCA GATCTGCGTC TGACCCGGCT ACAGGCCAAG
TTTAAGTGGA TAGACACCTT CTTTGACAAG CACAGGTTTG TCTCCCGGCT GGATCTGGGC
GCCAATCTGG TGAGCGAAGA GGATCTGCCC ATGGTGCCCC CTTCGCTGCG CTACTTTGCC
GGCGGCGATC AGAGCATCCG CGGCTATAGC TACCAGGAGC TTGGCCCCTA TATCGAATAT
ACCAACAGCC AAGATCAGCT GGCCCGCATG GTGGTGGGTG GCCGCTACCT GATGGTCGGC
AGCCTGGAGT ATCAGTACTA TCTCACCCCC ACATGGCGCC TTGCCACCTT CGTCGATGCC
GGTAACGCCT TCGACAATCA GCAGTTCGAG CCTATCGTCT CTGTGGGCGG CGGTGTCCAC
TGGATCTCTC CCATCGGCCC CATCAAGCTC GACCTGGGTG TCGGCCTGAA GGAAACAGAG
ACAGTTGATC GCAGCTGGCG CATCCATATC ACCATGGGGG CCGAGCTATG A
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| Protein sequence | MASIICDNKQ QQTFQLDRAF FLRIFATLSR LSILALLSFS MGISPVWAND WLKVEVDGAN
ESLKRNITAH LGALPGSEVQ RRAYIFNAEE NIEAALHSLG YYKGKIDQQL ESPESGPWTL
RLTVTPGAPT VIQWIDIQLS GEILDDEVIN AWLRQIKVKP GDVLNHGEYE AIKSQLLTYA
LARGYFEGKY LTNKIVVNRD LDSAQISLHY DSGPRYRIGE VSFNGHDLVP GFLDKLIPFE
PDSHYSTGKI GALNRELVDT GYFTNIKVLP QLDKMQDDRV PIRVEVTPKP SHSIELGLGA
DIGNSIDNNI EPRVRVTWRT PQINRYGHSQ ETSLEWSPDR PKFLTTYTIP LTHPLDDQLK
LRLGLLRDKY GVTQIYDPDK RDYRNTGELE SVKKLVGVVR QKRLHNQWLF TYSLDAINEE
YTQSDIKYNP DILLLGTSLS KTNRGDKSLD PKSGFFQYYS LEHADPSLGS DLRLTRLQAK
FKWIDTFFDK HRFVSRLDLG ANLVSEEDLP MVPPSLRYFA GGDQSIRGYS YQELGPYIEY
TNSQDQLARM VVGGRYLMVG SLEYQYYLTP TWRLATFVDA GNAFDNQQFE PIVSVGGGVH
WISPIGPIKL DLGVGLKETE TVDRSWRIHI TMGAEL
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