Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2170 |
Symbol | |
ID | 4923345 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 2523232 |
End bp | 2526069 |
Gene Length | 2838 bp |
Protein Length | 945 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640163755 |
Product | endonuclease/exonuclease/phosphatase |
Protein accession | YP_001094295 |
Protein GI | 127513098 |
COG category | [R] General function prediction only |
COG ID | [COG2374] Predicted extracellular nuclease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.160261 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTTACCA AAGCAAGCGC GCTTGCCTTG GCGATAGGTG GTGTCTCCAC CTTTGCCCAG GCCGCAGACG ATCTGATCAT CTCTGAGTAT GTAGAAGGCA GCAGCAACAA TAAGGCCGTC GAATTCTACA ATCCCACCGG CGCCGCCATC GATTTAAGTC AATATCAACT CGAGTTCTAC TTTAACGGCA GCACCAGTGC AGGCTCTACC ATAGCCCTTA CCGGTAGCCT GGCCGCCGGC AAGACCTATG TTCTGGCCGA CAACGATGCC GCCGCTGAGA TCTTAGCGGT CGCCGACCAG CTAAGCACAG CCAGTTTCTT CAACGGTGAC GACACCTTAG TGCTGCGCAA GCAGGGCCAG GTGATCGACA GCCTTGGTCA ATTGGGCACA GATCCGGGGT CAGAGTGGGG CAGCGGCGAT CTGTCGACCC AGAATAACAC CCTGCGCCGG GATCCTAACC AGCTGATCGC CGATACTCAG CTCGACGATG CCGTGACCCT GGCCACCTGG ACAGGGCATG CACAGGATGA TTTTAGCGAT CTCGGCCAGT TTGCCGGTCA GGGACCGACA GACCCAACCG ATCCGACGGA TCCTACCGAG CCACCGGTGG GCTTGGTTTG TCATGATCCG GCCACCAAGA TCTCAGAACT GCAGGGCAGT GGCGATATCA GCCCGCTCAA TGGTCAGAGT GTAATGGTCG AGGCGATCGT CACCAGCAAC CAGGAAGCTG GGCTCAAGGG TCTGTTCCTG CAGATGGCCG ATGCCGAGGC TGACGCTGAC ATCAACACCT CTGAGGGGGT CTTCGTTTAT ACCGGTGGTT CGCTGGGTTA TCAGGCGGGC GATCGCGTGC GTCTGACCGC CATGGTCAAG GAGTACAACG GCCTGACCGA GCTGACCAAT GTGAGCGAGC ACGCCTTGTG TGACAGCGCT CAGGCTCTGC CGAGCGCCGC CGAGGTGAGC CTGCCGCTGG CCCAGAGCAG CGACCTCGAA GCAGTCGAAG GCATGCGCGT ACACTTTACC CAGAACCTGG TGGTGAACGA GGTCTATAAC CTGGGACGCT ACGGCGAGAT CTTGCTCGGT AGTAAGCGTC ACTTCATCGG GACTCAGGTG GCCGAGCCTG GCAGCGAGGC GCTGGCGGTG AGTCAGGCCA ACGCCTTAGA CTCAGTGCTG CTGGACGATG GGTTAACCTC GCAAAATCCA GATCCTGTGC GTTACCCAGC ACCTGGCCTG AGTGCCGACA ATACTGTGCG TGTGGGTGAC TCGATCACAG AGCTTCACGC CGTGATGCAC TATGGCTTTG GCAAGTACCG TCTGATGCCA ATTGATACGG TTAACTTCGT GGCGACCAAC CCAAGAAGCA GCGAGCCAGC TTTGGCCGCC GGCGGTAACC TCAAGGTCGC CAGCTTCAAC GTACTGAACT ACTTTAACGG CGATGGCCTG GGCGGAGGCT TCCCGACGGA TCGCGGCGCC GACACGCCAA GCGAATTTGC CCGTCAGCGC GCCAAGATCA TCAGCGCCAT GGTCAGCATA GACGCCGACA TCTTCGGCCT GATGGAGATA GAAAACGACG GCTTTGGTAC TGAGTCGGCC ATCAATGACC TGGTGAGCGG TCTGAACCAG GCGGTGGGCG AGGCAAGATA TCAATTTATC TCTGCGCCAA CGCCAACCAT AGGCACAGAC GCCATTACCG TGGGCATGCT GTATCGTAGC GATCGCGTCA GGCCTGTGGG CGCGGCCAAG GTGCTTTCGA GCGCTAACTC GCCGCTGGAT GAGCAGGGTG AGGTACTGTT TAACGATGGT AAGAACCGTC CGAGTCTGAC CCAGGCCTTC GAGGTCTTGG TTGAAGATCA ACAACTTGTG GTGGCGGTGA ACCATCTTAA GTCTAAGGGC AGTGACTGCG TCAGCCTGGG TGACCCAGAC CTCAACGATG GTCAGGGTAA CTGTAACCTA ACCCGTACCC GCGCGGCGAC CGCCCTGGGG GCTTGGCTGG CCAGCGAGTA TGGCGAGCTG CCGACCCTGG TGATTGGTGA CATGAACGCC TATGCCAAGG AAGATCCAAT CGATGCGCTA CGTGGCGCCG GATACCTTGA GCTGTTCGAC CATCTGGGCA AGTCGGGTGC ATACTCCTAT GTCTTCTCCG GTGAAACGGG GCAACTGGAT CATGCACTGG CCAATACTCA GTTGGCCGAC AGGGTTGTCG ATGTGACCGA GTGGCATATC AATACCGACG AGCCAAGACT GCTGGATTAC AACGAAGAGT TTAAGTCTGC CGGTCAGATT GAGTCGCTCT ACAGCAGCGA TGCCTATCGC TCTTCGGACC ATGACCCTGT GGTGATCTCT TTGCTGCTCG AGCGTGAGAC CATAGCGCCA GTTGCCAGCT TCAGCTATGA GCTGCAGGGC CGCACCCTGA GCCTGGTGAG CAGCGCCACG GACGAAGATG GCGAAATAGT CGATTATCAA TGGGATCTTG GCAATGGTGA GACCGCCAGC GGCGAGCAGC TAAGCTATCG CTACGCCAAG GCCGGTGAGT ACCCAGTGAC CCTGACGGTA ACCGACAACG ATGGTCTGAG CCATAGCGTG ACTCAGGTGG TGAAGGTACA GGTGAAGCAG CAAAAGCCTG TTGCCGTCAT CGAGCATCTG GATCTCTGGT TTATGCATCT GTTTGTCTCG CTAAGCTATG ACACAGACGG TGAGATAGTG TCGCAGTCGT GGAAGTTTAA CAACGGCAGC AAGCAGACGG GTCCTGTGGC AATCAGTTTC GGTCACCGCG CCAGTAAGGT GAAGCTGACC GTTGAGGATA ACGACGGCCT CAAGGGTAAG GCTAAGTTAA ACTTCTAA
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Protein sequence | MFTKASALAL AIGGVSTFAQ AADDLIISEY VEGSSNNKAV EFYNPTGAAI DLSQYQLEFY FNGSTSAGST IALTGSLAAG KTYVLADNDA AAEILAVADQ LSTASFFNGD DTLVLRKQGQ VIDSLGQLGT DPGSEWGSGD LSTQNNTLRR DPNQLIADTQ LDDAVTLATW TGHAQDDFSD LGQFAGQGPT DPTDPTDPTE PPVGLVCHDP ATKISELQGS GDISPLNGQS VMVEAIVTSN QEAGLKGLFL QMADAEADAD INTSEGVFVY TGGSLGYQAG DRVRLTAMVK EYNGLTELTN VSEHALCDSA QALPSAAEVS LPLAQSSDLE AVEGMRVHFT QNLVVNEVYN LGRYGEILLG SKRHFIGTQV AEPGSEALAV SQANALDSVL LDDGLTSQNP DPVRYPAPGL SADNTVRVGD SITELHAVMH YGFGKYRLMP IDTVNFVATN PRSSEPALAA GGNLKVASFN VLNYFNGDGL GGGFPTDRGA DTPSEFARQR AKIISAMVSI DADIFGLMEI ENDGFGTESA INDLVSGLNQ AVGEARYQFI SAPTPTIGTD AITVGMLYRS DRVRPVGAAK VLSSANSPLD EQGEVLFNDG KNRPSLTQAF EVLVEDQQLV VAVNHLKSKG SDCVSLGDPD LNDGQGNCNL TRTRAATALG AWLASEYGEL PTLVIGDMNA YAKEDPIDAL RGAGYLELFD HLGKSGAYSY VFSGETGQLD HALANTQLAD RVVDVTEWHI NTDEPRLLDY NEEFKSAGQI ESLYSSDAYR SSDHDPVVIS LLLERETIAP VASFSYELQG RTLSLVSSAT DEDGEIVDYQ WDLGNGETAS GEQLSYRYAK AGEYPVTLTV TDNDGLSHSV TQVVKVQVKQ QKPVAVIEHL DLWFMHLFVS LSYDTDGEIV SQSWKFNNGS KQTGPVAISF GHRASKVKLT VEDNDGLKGK AKLNF
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